#include <genotypekit.hpp>

Public Member Functions
virtual	~GenotypeLikelihoodCalculator ()=default

virtual double	calculate_log_likelihood (const Snarl &site, const vector< SnarlTraversal > &traversals, const Genotype &genotype, const vector< vector< bool >> &consistencies, const vector< Support > &supports, const vector< Alignment * > &reads)=0

Detailed Description

Represents a strategy for calculating genotype likelihood for a (nested) Site. Polymorphic base class/interface.

Constructor & Destructor Documentation

virtual vg::GenotypeLikelihoodCalculator::~GenotypeLikelihoodCalculator ( )

virtualdefault

virtual double vg::GenotypeLikelihoodCalculator::calculate_log_likelihood	(	const Snarl &	site,
		const vector< SnarlTraversal > &	traversals,
		const Genotype &	genotype,
		const vector< vector< bool >> &	consistencies,
		const vector< Support > &	supports,
		const vector< Alignment * > &	reads
	)

pure virtual

Return the log likelihood of the given genotype.

The documentation for this class was generated from the following file: