dotplot_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <iostream>
#include "subcommand.hpp"
#include "../vg.hpp"
#include "../xg.hpp"
#include <vg/io/vpkg.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include "../position.hpp"
#include "algorithms/nearest_offsets_in_paths.hpp"

Functions
void	help_dotplot (char **argv)
int	main_dotplot (int argc, char **argv)

Detailed Description

Defines the "vg dotplot" subcommand, which renders dotplots from an xg index relating the embedded paths

Function Documentation

help_dotplot()

void help_dotplot

(

char **

argv

)

main_dotplot()

int main_dotplot	(	int	argc,
		char **	argv
	)