mapper.cpp File Reference

#include <unordered_set>
#include "mapper.hpp"
#include "graph.hpp"
#include "annotation.hpp"
#include "statistics.hpp"
#include "path.hpp"
#include "entropy.hpp"
#include "alignment.hpp"
#include "translator.hpp"
#include "algorithms/subgraph.hpp"
#include "algorithms/nearest_offsets_in_paths.hpp"
#include "algorithms/jump_along_path.hpp"
#include "algorithms/approx_path_distance.hpp"
#include "algorithms/path_string.hpp"
#include "algorithms/alignment_path_offsets.hpp"
#include "algorithms/extract_containing_graph.hpp"

Namespaces
	vg

Functions
int	vg::sub_overlaps_of_first_aln (const vector< Alignment > &alns, float overlap_fraction)
set< pos_t >	vg::gcsa_nodes_to_positions (const vector< gcsa::node_type > &nodes)
const int	vg::balanced_stride (int read_length, int kmer_size, int stride)
const vector< string >	vg::balanced_kmers (const string &seq, const int kmer_size, const int stride)