mcmc_main.cpp File Reference

#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <iostream>
#include <typeinfo>
#include <cassert>
#include <vector>
#include "subcommand.hpp"
#include <vg/io/vpkg.hpp>
#include "../mcmc_genotyper.hpp"
#include "../vg.hpp"
#include "../multipath_alignment.hpp"
#include "../mcmc_caller.hpp"
#include "../graph_caller.hpp"
#include <vg/io/stream.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include <fstream>

Functions
void	help_mcmc (char **argv)
int	main_mcmc (int argc, char **argv)

Detailed Description

: GFA (Graph Alignment Format) Fast Emitter: a new mapper that will be extremely fast once we actually write it

Function Documentation

help_mcmc()

void help_mcmc

(

char **

argv

)

main_mcmc()

int main_mcmc	(	int	argc,
		char **	argv
	)