vg
tools for working with variation graphs
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#include <omp.h>
#include <unistd.h>
#include <ctime>
#include <getopt.h>
#include <thread>
#include <atomic>
#include <mutex>
#include <list>
#include "subcommand.hpp"
#include <vg/io/vpkg.hpp>
#include "../algorithms/component.hpp"
#include "../algorithms/pad_band.hpp"
#include "../multipath_mapper.hpp"
#include "../mem_accelerator.hpp"
#include "../surjector.hpp"
#include "../multipath_alignment_emitter.hpp"
#include "../path.hpp"
#include "../watchdog.hpp"
#include <bdsg/overlays/overlay_helper.hpp>
#include <bdsg/packed_graph.hpp>
#include <bdsg/hash_graph.hpp>
#include <xg.hpp>
Functions | |
pair< vector< double >, vector< pair< double, double > > > | parse_intron_distr_file (ifstream &strm) |
void | help_mpmap (char **argv) |
int | main_mpmap (int argc, char **argv) |
: multipath mapping of reads to a graph
void help_mpmap | ( | char ** | argv | ) |
int main_mpmap | ( | int | argc, |
char ** | argv | ||
) |
pair<vector<double>, vector<pair<double, double> > > parse_intron_distr_file | ( | ifstream & | strm | ) |