vg
tools for working with variation graphs
Functions
mpmap_main.cpp File Reference
#include <omp.h>
#include <unistd.h>
#include <ctime>
#include <getopt.h>
#include <thread>
#include <atomic>
#include <mutex>
#include <list>
#include "subcommand.hpp"
#include <vg/io/vpkg.hpp>
#include "../algorithms/component.hpp"
#include "../algorithms/pad_band.hpp"
#include "../multipath_mapper.hpp"
#include "../mem_accelerator.hpp"
#include "../surjector.hpp"
#include "../multipath_alignment_emitter.hpp"
#include "../path.hpp"
#include "../watchdog.hpp"
#include <bdsg/overlays/overlay_helper.hpp>
#include <bdsg/packed_graph.hpp>
#include <bdsg/hash_graph.hpp>
#include <xg.hpp>

Functions

pair< vector< double >, vector< pair< double, double > > > parse_intron_distr_file (ifstream &strm)
 
void help_mpmap (char **argv)
 
int main_mpmap (int argc, char **argv)
 

Detailed Description

: multipath mapping of reads to a graph

Function Documentation

◆ help_mpmap()

void help_mpmap ( char **  argv)

◆ main_mpmap()

int main_mpmap ( int  argc,
char **  argv 
)

◆ parse_intron_distr_file()

pair<vector<double>, vector<pair<double, double> > > parse_intron_distr_file ( ifstream &  strm)