nested_flow_caller.hpp File Reference

#include <iostream>
#include <algorithm>
#include <functional>
#include <cmath>
#include <limits>
#include <unordered_set>
#include <tuple>
#include "handle.hpp"
#include "snarls.hpp"
#include "traversal_finder.hpp"
#include "snarl_caller.hpp"
#include "region.hpp"
#include "zstdutil.hpp"
#include "vg/io/alignment_emitter.hpp"
#include "gref.hpp"
#include "graph_caller.hpp"
#include "vcf_output_caller.hpp"
#include "gaf_output_caller.hpp"
#include "snarl_graph.hpp"

Classes
class	vg::NestedFlowCaller
struct	vg::NestedFlowCaller::CallRecord
	stuff we remember for each snarl call, to be used when genotyping its parent More...

Namespaces
	vg