haplo::haplo_DP_column Struct Reference

#include <haplotypes.hpp>

Public Member Functions
template<class accessorType >
	haplo_DP_column (accessorType &ga)
	~haplo_DP_column ()
template<class accessorType >
void	extend (accessorType &ga)
vector< int64_t >	get_sizes () const
vector< double >	get_scores () const
double	current_sum () const
void	print (ostream &out) const
bool	is_empty () const

Private Member Functions
template<class accessorType >
void	binary_extend_intervals (accessorType &ga, int_itvl_t indices, int_itvl_t ss_deltas, int_itvl_t state_sizes)
template<class accessorType >
void	standard_extend (accessorType &ga)
void	update_inner_values ()
void	update_score_vector (haploMath::RRMemo &memo)
double	previous_R (size_t i) const

Private Attributes
vector< double >	previous_values
vector< int64_t >	previous_sizes
vector< shared_ptr< haplo_DP_rectangle > >	entries
double	previous_sum
double	sum
double	length

Constructor & Destructor Documentation

haplo_DP_column()

template<class accessorType >

haplo::haplo_DP_column::haplo_DP_column

(

accessorType &

ga

)

~haplo_DP_column()

haplo::haplo_DP_column::~haplo_DP_column

(

)

Member Function Documentation

binary_extend_intervals()

template<class accessorType >

void haplo::haplo_DP_column::binary_extend_intervals ( accessorType &  ga, int_itvl_t  indices, int_itvl_t  ss_deltas, int_itvl_t  state_sizes  )

private

current_sum()

double haplo::haplo_DP_column::current_sum

(

)

const

extend()

template<class accessorType >

void haplo::haplo_DP_column::extend

(

accessorType &

ga

)

get_scores()

vector< double > haplo::haplo_DP_column::get_scores

(

)

const

get_sizes()

vector< int64_t > haplo::haplo_DP_column::get_sizes

(

)

const

is_empty()

bool haplo::haplo_DP_column::is_empty

(

)

const

previous_R()

double haplo::haplo_DP_column::previous_R ( size_t  i ) const

private

print()

void haplo::haplo_DP_column::print

(

ostream &

out

)

const

standard_extend()

template<class accessorType >

void haplo::haplo_DP_column::standard_extend ( accessorType &  ga )

private

update_inner_values()

void haplo::haplo_DP_column::update_inner_values ( )

private

update_score_vector()

void haplo::haplo_DP_column::update_score_vector ( haploMath::RRMemo &  memo )

private

Member Data Documentation

entries

vector<shared_ptr<haplo_DP_rectangle> > haplo::haplo_DP_column::entries

private

length

double haplo::haplo_DP_column::length

private

previous_sizes

vector<int64_t> haplo::haplo_DP_column::previous_sizes

private

previous_sum

double haplo::haplo_DP_column::previous_sum

private

previous_values

vector<double> haplo::haplo_DP_column::previous_values

private

sum

double haplo::haplo_DP_column::sum

private

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The documentation for this struct was generated from the following files:

• src/haplotypes.hpp
• src/haplotypes.cpp