- t -

• tag() : vg::Funnel
• tag_correct() : vg::Funnel
• tag_seeds() : vg::MinimizerMapper
• tail_nodes() : vg::VG
• tail_offset() : vg::GaplessExtension
• tail_position() : vg::GaplessExtension
• take() : vg::io::MessageIterator , vg::io::ProtobufIterator< T > , vg::RecombinatorHaplotype
• target_memory_usage() : vg::IndexingPlan
• target_offset() : vg::WFAPoint
• TargetValueSearch() : vg::TargetValueSearch
• Tell() : vg::io::BlockedGzipInputStream , vg::io::BlockedGzipOutputStream
• tell_group() : vg::io::MessageIterator , vg::io::ProtobufIterator< T >
• test_splice_candidates() : vg::MultipathMapper
• tick() : vg::Range< Number > , vg::ZipCodeTree::reverse_iterator
• tick_along_chain() : vg::Range< Number > , vg::subcommand::TickChainLink
• tick_chain() : vg::subcommand::GroupedOptionGroup , vg::subcommand::OptionGroup< Receiver > , vg::subcommand::TickChainLink
• TickChainLink() : vg::subcommand::TickChainLink
• TipAnchoredMaxDistance() : vg::TipAnchoredMaxDistance
• to_alignment() : vg::ReadFilter< Read >
• to_anchor() : vg::MinimizerMapper
• to_anchors() : vg::MinimizerMapper
• to_backing() : vg::ExtraNodeGraph , vg::SourceSinkOverlay
• to_big_endian() : vg::endianness< IntType >
• to_dot() : vg::Funnel , vg::IndexRegistry , vg::IntegratedSnarlFinder::MergedAdjacencyGraph , vg::MultipathAlignmentGraph , vg::VG
• to_gfa() : xg::XG
• to_graph() : vg::Paths
• to_json() : vg::Paths
• to_length() : vg::edit_t
• to_mapping() : vg::mapping_t
• to_number() : vg::BitString
• to_path() : vg::GaplessExtension , vg::MinimizerMapper , vg::WFAAlignment
• to_seed() : vg::GaplessExtender
• to_sequence() : vg::FragmentedHaplotypeVisit
• to_simple_reverse() : vg::FlowSort
• to_simple_reverse_orientation() : vg::FlowSort
• to_string() : ReferenceInterval , vg::BREAKPOINT , vg::Haplotypes::Subchain , vg::str_view
• to_turtle() : vg::VG
• to_vector() : vg::varint_vector_t , vg::ZipCode
• to_visit() : vg::NodeSide
• to_wfa_alignment() : vg::MinimizerMapper
• to_xg() : vg::VGset
• toggle_bit() : handlegraph::number_bool_packing
• top() : vg::MatchPos::PathList , vg::ZipCodeTree::reverse_iterator
• top_down_genotype() : vg::LegacyCaller
• top_level_snarls() : vg::SnarlManager
• topological_order() : vg::MEMClusterer::HitGraph
• topological_sort() : vg::MultipathAlignmentGraph
• total() : vg::MinimizerMapper::aligner_stats_t::stat_collection_t
• total_node_quality() : vg::Packer
• total_reference_paths() : vg::PrimerFinder
• total_supports() : vg::BREAKPOINT
• trace() : vg::DozeuInterface , vg::QualAdjXdropAligner , vg::SnarlState , vg::XdropAligner
• trace_haplotype() : vg::GenomeState
• trace_to_alignment() : vg::DeletionAligner
• traceback() : vg::AlignmentChainModel , vg::BandedGlobalAligner< IntType >::BAMatrix , vg::BandedGlobalAligner< IntType > , vg::DeletionAligner , vg::MEMChainModel
• traceback_over_edge() : vg::BandedGlobalAligner< IntType >::BAMatrix
• Transcript() : vg::Transcript
• transcript_paths() : vg::Transcriptome
• Transcriptome() : vg::Transcriptome
• TranscriptPath() : vg::TranscriptPath
• transform() : vg::VGset
• transitive_reduction() : vg::Surjector
• translate() : vg::Translator
• translate_back() : handlegraph::NamedNodeBackTranslation , vg::algorithms::GFAIDMapInfo , vg::FlatFileBackTranslation
• translate_down() : vg::PathSubgraph , vg::TreeSubgraph
• translate_node_ids() : vg::JoinedSpliceGraph
• translate_snarl_num() : vg::SnarlManager
• Translator() : vg::Translator
• trav_sequence() : vg::VG
• trav_string() : vg::VCFOutputCaller
• TraversalSupportFinder() : vg::TraversalSupportFinder
• traverse_computed_decomposition() : vg::IntegratedSnarlFinder
• traverse_decomposition() : vg::HandleGraphSnarlFinder , vg::IntegratedSnarlFinder
• traverse_edge_handle() : handlegraph::HandleGraph
• traverse_in_order() : vg::BitStringTree< Item > , vg::BitStringTree< Item >::TreeNode
• traverse_left() : vg::Paths
• traverse_right() : vg::Paths
• traverse_up() : vg::BitStringTree< Item > , vg::BitStringTree< Item >::TreeNode
• travs_from() : vg::VG
• travs_of() : vg::VG
• travs_to() : vg::VG
• Tree() : vg::Tree< T >
• tree_item_t() : vg::ZipCodeTree::tree_item_t
• TreeNode() : vg::TreeNode< T >
• TreeSubgraph() : vg::TreeSubgraph
• trim() : vg::WFATree
• trim_ambiguous_end() : vg::ReadFilter< Read >
• trim_ambiguous_ends() : vg::ReadFilter< Read >
• trim_and_check_for_empty() : vg::MultipathAlignmentGraph
• trim_hanging_indels() : vg::MultipathAlignmentGraph
• trim_to_branch_points() : vg::MultipathAlignmentGraph
• trim_to_variable() : vg::Constructor
• TriviallySerializable() : handlegraph::TriviallySerializable
• TrivialTraversalFinder() : vg::TrivialTraversalFinder
• truncate_handle() : handlegraph::DeletableHandleGraph
• truncated_normal_distribution() : vg::truncated_normal_distribution< T >
• try_load_bare() : vg::io::VPKG
• try_load_encapsulated() : vg::io::VPKG
• try_load_first() : vg::io::VPKG
• try_load_first_bare() : vg::io::VPKG
• try_load_first_encapsulated() : vg::io::VPKG
• try_load_one() : vg::io::VPKG
• TSVAlignmentEmitter() : vg::io::TSVAlignmentEmitter
• TSVExplainer() : vg::TSVExplainer
• tv_path() : vg::TargetValueSearch
• tv_path_exists() : vg::TargetValueSearch
• tv_path_length() : vg::TargetValueSearch
• tv_phase2() : vg::TargetValueSearch
• TVSClusterer() : vg::TVSClusterer
• type_as_char() : ReferenceInterval