- o -

• occs : vg::MinimizerMapper::Minimizer
• off_ref_paths : vg::Deconstructor
• offset : vg::GaplessExtension , vg::Haplotypes::TopLevelChain , vg::PathBranch , vg::Position , vg::Primer , vg::VectorView< Item >::const_iterator , vg::ZipCode::decoder_t
• offsets : xg::XGPath
• offsets_rank : xg::XGPath
• offsets_select : xg::XGPath
• ok : vg::GAFSorterFile , vg::WFAAlignment
• OLD_EDGE_TYPE_END_END : xg::XG
• OLD_EDGE_TYPE_END_START : xg::XG
• OLD_EDGE_TYPE_MAX : xg::XG
• OLD_EDGE_TYPE_MIN : xg::XG
• OLD_EDGE_TYPE_START_END : xg::XG
• OLD_EDGE_TYPE_START_START : xg::XG
• OLD_G_EDGE_LENGTH : xg::XG
• OLD_G_EDGE_OFFSET_OFFSET : xg::XG
• OLD_G_EDGE_TYPE_OFFSET : xg::XG
• OLD_G_NODE_FROM_COUNT_OFFSET : xg::XG
• OLD_G_NODE_TO_COUNT_OFFSET : xg::XG
• old_node : haplo::hDP_gbwt_graph_accessor< GBWTType >
• old_score : vg::GaplessExtension
• old_version_path_name_end : xg::XG
• old_version_path_name_start : xg::XG
• oneof_location : vg::LocationSupport
• only_correctly_mapped : vg::ReadFilter< Read >
• only_first_alignment : vg::ReadFilter< Read >
• only_mapped : vg::ReadFilter< Read >
• only_proper_pairs : vg::ReadFilter< Read >
• open_chains : vg::ZipCodeForest::forest_growing_state_t
• open_intervals : vg::ZipCodeForest::forest_growing_state_t
• opt_fields : gafkluge::GafRecord
• option : vg::subcommand::BaseArgSpec< Receiver > , vg::subcommand::BaseValuation
• option_id : vg::subcommand::BaseArgSpec< Receiver >
• option_offsets : vg::Configurable
• option_to_index : vg::subcommand::OptionGroup< Receiver >
• options_by_code : vg::ConfigurableParser
• order : vg::DozeuInterface::OrderedGraph , vg::StreamSorter< Message >
• order_length_repeat_hit_max : vg::MultipathMapper
• oriented_chain_id : vg::FragmentedHaplotypeVisit
• OS : vg::Version
• other : vg::algorithms::Edge , vg::io::streaminbuf
• other_orientation_timeout : vg::RepresentativeTraversalFinder
• other_supports : vg::BREAKPOINT
• out : vg::ProblemDumpExplainer , vg::TSVExplainer
• out_buffer : vg::zstd_compress_buf , vg::zstd_decompress_buf
• out_file : vg::HTSWriter , vg::io::GafAlignmentEmitter , vg::io::TSVAlignmentEmitter , vg::io::VGAlignmentEmitter
• out_mutex : vg::io::ProtobufEmitter< T >
• out_stream : vg::MCMCCaller
• out_to : vg::ExtraNodeGraph
• outfile : vg::Viz
• output : vg::io::hFILE_cppstream
• output_fields : vg::ReadFilter< Read >
• output_in_progress : vg::Funnel
• output_is_bgzf : vg::HTSWriter
• output_names : Vectorizer
• output_png : vg::Viz
• output_prefix : vg::IndexRegistry
• output_svg : vg::Viz
• output_tabbed : Vectorizer
• output_variants : vg::VCFOutputCaller
• output_vcf : vg::VCFOutputCaller
• OUTPUT_VERSION : vg::StreamIndexBase
• overall_support : vg::Locus
• overlap : vg::Edge
• OVERLAP_THRESHOLD : vg::GaplessExtender
• own_snarl_manager : vg::Masker