- m -

• make_bands() : vg::Mapper
• make_circular() : vg::Paths
• make_compact() : vg::Packer
• make_dynamic() : vg::Packer
• make_edge() : vg::PhaseUnfolder
• make_empty() : vg::WFAAlignment
• make_graph() : vg::MSAConverter
• make_hit_graph() : vg::ComponentMinDistanceClusterer , vg::GreedyMinDistanceClusterer , vg::MEMClusterer , vg::MinDistanceClusterer , vg::NullClusterer , vg::OrientedDistanceClusterer , vg::TVSClusterer
• make_indexes() : vg::IndexRegistry
• make_linear() : vg::Paths
• make_long_options() : vg::subcommand::BaseOptionGroup , vg::subcommand::GroupedOptionGroup , vg::subcommand::OptionGroup< Receiver >
• make_nontrivial_multipath_alignment() : vg::MultipathMapper
• make_null_alignment() : vg::Surjector
• make_null_mp_alignment() : vg::Surjector
• make_plan() : vg::IndexRegistry
• make_primer() : vg::PrimerFinder
• make_short_options() : vg::subcommand::BaseOptionGroup , vg::subcommand::GroupedOptionGroup , vg::subcommand::OptionGroup< Receiver >
• make_snarl_graph() : vg::MCMCGenotyper
• make_snarl_map() : vg::MCMCGenotyper
• make_subset_graph() : vg::Genotyper
• make_unlocalized_insertion() : vg::WFAAlignment
• manage() : vg::SnarlManager
• map() : vg::MinimizerMapper
• map_from_chains() : vg::MinimizerMapper
• map_from_extensions() : vg::MinimizerMapper
• map_paired() : vg::MinimizerMapper
• map_stage_results_to_previous_stage() : vg::Funnel
• map_to_nodes() : vg::PrimerFinder
• Mapper() : vg::Mapper
• mapping() : vg::path_t
• mapping_enters_side() : vg::Genotyper
• mapping_exits_side() : vg::Genotyper
• mapping_is_total_match() : vg::VG
• mapping_likelihoods() : vg::MultipathMapper
• mapping_path_id() : vg::Paths
• mapping_path_name() : vg::Paths
• mapping_quality() : vg::multipath_alignment_t
• mapping_quality_score_diff() : vg::GSSWAligner
• mapping_size() : vg::path_t
• mapping_t() : vg::mapping_t
• mark_dfs() : vg::FlowSort
• mark_smallVariant_alignments() : vg::Filter
• mark_sv_alignments() : vg::Filter
• MarkovDistribution() : vg::NGSSimulator::MarkovDistribution< From, To >
• mask_sequences() : vg::Masker
• Masker() : vg::Masker
• match_forward() : vg::WFANode
• match_predecessor() : vg::WFATree
• matches() : vg::DinucleotideMachine
• matches_annotation() : vg::ReadFilter< Read >
• matches_name() : vg::ReadFilter< Read >
• MatchPos() : vg::MatchPos
• max() : vg::WideningPRNG< PRNG, OutType >
• max_depth() : vg::ZipCode
• max_distance_from_start() : vg::IncrementalSubgraph
• max_flow_sort() : vg::FlowSort
• max_in() : vg::algorithms::TracedScore
• max_link_length() : vg::JoinedSpliceGraph
• max_node_id() : handlegraph::algorithms::SubHandleGraph , handlegraph::HandleGraph , vg::DagifiedGraph , vg::DozeuPinningOverlay , vg::ExtraNodeGraph , vg::IdentityOverlay , vg::IncrementalSubgraph , vg::IndexedVG , vg::JoinedSpliceGraph , vg::MemoizingGraph , vg::NetGraph , vg::NullMaskingGraph , vg::PathSubgraph , vg::ReverseGraph , vg::SnarlGraph , vg::SourceSinkOverlay , vg::StrandSplitGraph , vg::SubgraphOverlay , vg::SubHandleGraph , vg::SubpathOverlay , vg::TreeSubgraph , vg::VG , vg::VGset , xg::XG
• max_node_rank() : xg::XG
• max_path_rank() : xg::XG
• max_possible_mapping_quality() : vg::GSSWAligner , vg::Mapper
• max_sample_size() : vg::FragmentLengthDistribution
• max_shift() : vg::MultipathAlignmentGraph
• max_vertex() : vg::AlignmentChainModel , vg::MEMChainModel
• MaximalExactMatch() : vg::MaximalExactMatch
• maximum_mapping_quality_approx() : vg::GSSWAligner
• maximum_mapping_quality_exact() : vg::GSSWAligner
• MCMCCaller() : vg::MCMCCaller
• MCMCGenotyper() : vg::MCMCGenotyper
• mean() : vg::FragmentLengthDistribution , vg::normal_distribution< T > , vg::truncated_normal_distribution< T >
• mean_node_length() : vg::Transcriptome
• measurements_begin() : vg::FragmentLengthDistribution
• measurements_end() : vg::FragmentLengthDistribution
• median_mem_coverage() : vg::MEMClusterer::HitGraph
• MEMAccelerator() : vg::MEMAccelerator
• MEMChainModel() : vg::MEMChainModel
• MEMChainModelVertex() : vg::MEMChainModelVertex
• MEMClusterer() : vg::MEMClusterer
• memoized_LF() : vg::MEMAccelerator
• MemoizingGraph() : vg::MemoizingGraph
• mems_id_clusters_to_alignments() : vg::Mapper
• merge() : vg::Funnel , vg::IntegratedSnarlFinder::MergedAdjacencyGraph , vg::VG
• merge_from_dynamic() : vg::Packer
• merge_from_files() : vg::Packer
• merge_group() : vg::Funnel
• merge_groups() : vg::Funnel
• merge_id_space() : vg::VGset
• merge_nodes() : vg::VG
• merge_partially_redundant_match_nodes() : vg::MultipathAlignmentGraph
• merge_rescued_mappings() : vg::MultipathMapper
• merge_state() : vg::DinucleotideMachine
• merge_union() : vg::VG
• MergedAdjacencyGraph() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
• MessageEmitter() : vg::io::MessageEmitter
• MessageIterator() : vg::io::MessageIterator
• min() : vg::WideningPRNG< PRNG, OutType >
• min_approx_path_distance() : xg::XG
• min_cut() : vg::FlowSort
• min_distance_from_start() : vg::IncrementalSubgraph
• min_dists() : vg::DeletionAligner
• min_link_length() : vg::JoinedSpliceGraph
• min_node_id() : handlegraph::algorithms::SubHandleGraph , handlegraph::HandleGraph , vg::DagifiedGraph , vg::DozeuPinningOverlay , vg::ExtraNodeGraph , vg::IdentityOverlay , vg::IncrementalSubgraph , vg::IndexedVG , vg::JoinedSpliceGraph , vg::MemoizingGraph , vg::NetGraph , vg::NullMaskingGraph , vg::PathSubgraph , vg::ReverseGraph , vg::SnarlGraph , vg::SourceSinkOverlay , vg::StrandSplitGraph , vg::SubgraphOverlay , vg::SubHandleGraph , vg::SubpathOverlay , vg::TreeSubgraph , vg::VG , xg::XG
• min_pair_fragment_length() : vg::Mapper
• min_support_in_path() : vg::NestedTraversalFinder , vg::RepresentativeTraversalFinder
• MinDistanceClusterer() : vg::MinDistanceClusterer
• MinimizerMapper() : vg::MinimizerMapper
• minimum_distance_between() : vg::ZipCode
• mismatches() : vg::GaplessExtension
• MissingEOF() : vg::io::BlockedGzipInputStream
• motif_frequency() : vg::SpliceStats
• motif_is_reverse() : vg::SpliceStats
• motif_score() : vg::SpliceStats
• motif_size() : vg::SpliceStats
• move() : vg::SmallBitset
• MSAConverter() : vg::MSAConverter
• multi_surject() : vg::Surjector
• multipath_align() : vg::MultipathMapper
• multipath_alignment_t() : vg::multipath_alignment_t
• multipath_map() : vg::MultipathMapper
• multipath_map_paired() : vg::MultipathMapper
• MultipathAlignmentEmitter() : vg::MultipathAlignmentEmitter
• MultipathAlignmentGraph() : vg::MultipathAlignmentGraph
• MultipathMapper() : vg::MultipathMapper
• MultipathProblem() : vg::MultipathProblem
• mutable_connection() : vg::subpath_t
• mutable_edit() : vg::path_mapping_t
• mutable_mapping() : vg::path_t
• mutable_next() : vg::subpath_t
• mutable_path() : vg::subpath_t
• mutable_position() : vg::path_mapping_t
• mutable_quality() : vg::multipath_alignment_t
• mutable_sequence() : vg::edit_t , vg::multipath_alignment_t
• mutable_start() : vg::multipath_alignment_t
• mutable_subpath() : vg::multipath_alignment_t
• mutate() : vg::Sampler
• mutate_edit() : vg::Sampler