- g -

• g_bv : xg::XG
• g_bv_rank : xg::XG
• g_bv_select : xg::XG
• g_iv : xg::XG
• G_NODE_HEADER_LENGTH : xg::XG
• G_NODE_ID_OFFSET : xg::XG
• G_NODE_LEFT_COUNT_OFFSET : xg::XG
• G_NODE_LENGTH_OFFSET : xg::XG
• G_NODE_RIGHT_COUNT_OFFSET : xg::XG
• G_NODE_SEQ_START_OFFSET : xg::XG
• gaf_output : vg::FlowCaller , vg::NestedFlowCaller , vg::VCFGenotyper
• gaf_sample_name : vg::GAFOutputCaller
• gam_format : GBWTConfig
• gap_distance_limit : vg::ZipCodeForest::forest_growing_state_t
• gap_extend : ScoringOptions , vg::WFATree
• gap_extension : vg::DeletionAligner , vg::GSSWAligner , vg::SSWAligner
• gap_length : vg::WFAExtender::ErrorModel
• gap_memo_max_size : vg::MultipathMapper
• gap_open : ScoringOptions , vg::DeletionAligner , vg::GSSWAligner , vg::SSWAligner , vg::WFATree
• gap_scale : vg::MinimizerMapper
• gapless_extension_limit : vg::MinimizerMapper
• gaps : vg::WFAExtender::ErrorModel
• gbwt : vg::Deconstructor , vg::GBWTTraversalFinder
• gbwt_buffer_size : vg::HaplotypeIndexer
• gbwt_graph : GraphHandler , vg::MinimizerMapper , vg::PrimerFinder
• gbwt_index : vg::PhaseUnfolder , vg::PrimerFinder
• gbwt_insert_batch_size : vg::IndexingParameters
• gbwt_insert_batch_size_increase_factor : vg::IndexingParameters
• gbwt_name : GBWTConfig
• gbwt_node_offset : vg::FragmentedHaplotypeVisit
• GBWT_OFFSET_TAG : vg::GAFSorterRecord
• gbwt_output : GBWTConfig
• gbwt_reference_samples : vg::Deconstructor
• gbwt_sample_to_phase_range : vg::Deconstructor
• gbwt_sampling_interval : vg::IndexingParameters
• gbwt_trav_finder : vg::Deconstructor
• gbwtgraph_name : GBWTConfig
• gbz : vg::GBZGraph , vg::HaplotypePartitioner , vg::Recombinator
• gbz_format : GBWTConfig
• gbz_output : HaplotypesConfig
• gc_content_estimate : vg::AlignerClient
• gcsa : vg::BaseMapper
• gcsa_doubling_steps : vg::IndexingParameters
• gcsa_ind : vg::Filter
• gcsa_initial_kmer_length : vg::IndexingParameters
• gcsa_size_limit : vg::IndexingParameters
• generalizations : vg::IndexRegistry
• genome : vg::MCMCCaller
• genotype : vg::Locus
• genotype_by_ploidy : vg::NestedFlowCaller::CallRecord
• genotype_snarls : vg::FlowCaller , vg::NestedFlowCaller
• get_edge_support : vg::RepresentativeTraversalFinder
• get_handle_memo : vg::MemoizingGraph
• get_index : vg::RepresentativeTraversalFinder
• get_node_support : vg::RepresentativeTraversalFinder
• get_rescue_graph_from_paths : vg::MultipathMapper
• get_seed : vg::LazyRNG
• gfa_id_space : vg::GFAHandleGraph
• gfa_parameters : GBWTConfig
• gff_feature_name : vg::IndexingParameters
• gff_transcript_tag : vg::IndexingParameters
• giraffe_gbwt_downsample : vg::IndexingParameters
• giraffe_mapper : vg::PrimerFinder
• globals : vg::DiagramExplainer
• go_left : vg::ChainIterator
• gq : vg::PoissonSupportSnarlCaller::PoissonCallInfo
• grandparent_net_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
• graph : handlegraph::PathForEachSocket , handlegraph::PathForEachSocket::iterator , haplo::hDP_gbwt_graph_accessor< GBWTType > , haplo::linear_haplo_structure , vg::AbstractReadSampler , vg::AliasGraph , vg::AugmentedGraph , vg::BandedGlobalAligner< IntType >::AltTracebackStack , vg::BandedGlobalAligner< IntType > , vg::CactusSnarlFinder , vg::ConstructedChunk , vg::ContractingGraph , vg::DagifiedGraph , vg::Deconstructor , vg::DozeuInterface::OrderedGraph , vg::DozeuPinningOverlay , vg::ExhaustiveTraversalFinder , vg::FlowCaller , vg::FlowTraversalFinder , vg::GaplessExtender , vg::GBWTTraversalFinder , vg::GraphSynchronizer , vg::HandleGraphNodeSet , vg::HandleGraphSnarlFinder , vg::IdentityOverlay , vg::IncrementalSubgraph , vg::IntegratedSnarlFinder::MergedAdjacencyGraph , vg::io::GafAlignmentEmitter , vg::LegacyCaller , vg::Masker , vg::MCMCGenotyper , vg::MemoizingGraph , vg::MultipathAlignmentEmitter , vg::NestedFlowCaller , vg::NetGraph , vg::NullMaskingGraph , vg::Packer , vg::PathBasedTraversalFinder , vg::PathChunker , vg::PathOrientedDistanceMeasurer , vg::PathRestrictedTraversalFinder , vg::PathTraversalFinder , vg::PrimerFinder , vg::RareVariantSimplifier , vg::ReadFilter< Read > , vg::RegionExpander , vg::RepresentativeTraversalFinder , vg::SmallSnarlSimplifier , vg::SnarlDistanceIndexClusterer , vg::SnarlState , vg::SplicedHTSAlignmentEmitter , vg::StrandSplitGraph , vg::SupportBasedSnarlCaller , vg::Surjector , vg::TraversalSupportFinder , vg::TrivialTraversalFinder , vg::VariantAdder , vg::VCFGenotyper , vg::VCFTraversalFinder , vg::VG , vg::VG::Plan , vg::WFAExtender , vg::WFATree
• graph_name : GBWTConfig , HaplotypesConfig
• graph_output : GBWTConfig
• greedy_min_dist : vg::MultipathMapper
• greedy_pieces : vg::Constructor
• greedy_restart_assume_substitution : vg::BaseMapper
• greedy_restart_max_count : vg::BaseMapper
• greedy_restart_max_lcp : vg::BaseMapper
• greedy_restart_min_length : vg::BaseMapper
• group : vg::io::MessageEmitter
• group_cache : vg::IndexedVG
• group_count : vg::io::MessageIterator
• group_handlers : vg::io::MessageEmitter , vg::io::ProtobufEmitter< T >
• group_idx : vg::io::MessageIterator
• group_size : vg::Funnel::Item
• group_tag : vg::io::MessageEmitter
• group_vo : vg::io::MessageIterator