Here is a list of all class members with links to the classes they belong to:

- b -

• b() : vg::uniform_int_distribution< T > , vg::uniform_real_distribution< T >
• BABuilder() : vg::BandedGlobalAligner< IntType >::BABuilder , vg::BandedGlobalAligner< IntType >::BAMatrix
• back() : haplo::gbwt_thread_t
• back_translate_alignments_in_place() : vg::BackTranslatingAlignmentEmitter
• backbone : vg::FlowSort::Growth
• backed_up : vg::io::BlockedGzipOutputStream
• background_sampler : vg::NGSSimulator
• backing : vg::BackTranslatingAlignmentEmitter , vg::ExtraNodeGraph , vg::SourceSinkOverlay , vg::SurjectingAlignmentEmitter
• backing_files : vg::HTSWriter
• backing_graph : vg::GenomeState , vg::SnarlGraph , vg::SubgraphOverlay , vg::SubpathOverlay
• backing_heads : vg::SourceSinkOverlay
• backing_index() : vg::VectorView< Item >
• backing_path_graph : vg::PathSubgraphOverlay
• backing_stream : vg::io::StreamMultiplexer
• backing_tails : vg::SourceSinkOverlay
• BackTranslatingAlignmentEmitter() : vg::BackTranslatingAlignmentEmitter
• BackUp() : vg::io::BlockedGzipInputStream , vg::io::BlockedGzipOutputStream
• backward : vg::KmerMatch , vg::NodeTraversal , vg::Visit
• BAD_EDIT : vg::AlignmentValidity
• bad_edit_index : vg::AlignmentValidity
• bad_mapping_index : vg::AlignmentValidity
• bad_read_position : vg::AlignmentValidity
• bad_subchains : vg::Recombinator::Statistics
• badness() : vg::Haplotypes::Subchain
• BADNESS_THRESHOLD : vg::Recombinator
• badness_threshold : vg::Recombinator::Parameters
• BAM : vg::MultipathAlignmentEmitter
• BAMatrix() : vg::BandedGlobalAligner< IntType >::BAMatrix
• band_begin : vg::AlignmentChainModelVertex
• band_idx : vg::AlignmentChainModelVertex
• band_multimaps : vg::Mapper
• banded_matrices : vg::BandedGlobalAligner< IntType >
• BandedGlobalAligner : vg::BandedGlobalAligner< IntType >::BAMatrix , vg::BandedGlobalAligner< IntType >
• base : vg::io::hFILE_cppstream , vg::WideningPRNG< PRNG, OutType >
• base_edge() : vg::AugmentedGraph
• base_graph : vg::AugmentedGraph
• base_locks : vg::Packer
• base_pileup : vg::NodePileup
• base_seed_length() : vg::algorithms::Anchor
• BaseArgSpec() : vg::subcommand::BaseArgSpec< Receiver >
• baseline_error_large : vg::PoissonSupportSnarlCaller
• baseline_error_small : vg::PoissonSupportSnarlCaller
• BaseMapper() : vg::BaseMapper
• BaseOption() : vg::BaseOption< Value, Parser >
• bases : vg::BasePileup , vg::MinimizerMapper::aligner_stats_t
• bases_per_chunk : vg::Constructor
• BaseValuation() : vg::subcommand::BaseValuation
• Basic : vg::IndexingParameters
• batch_file_prefix : vg::HaplotypeIndexer
• batch_size : GiraffeMainOptions , vg::ReadFilter< Read > , vg::RebuildParameters
• before : ReferenceInterval
• begin() : handlegraph::PathForEachSocket , vg::algorithms::kmer_t , vg::algorithms::walk_t , vg::kmer_t , vg::MaximalExactMatch , vg::Option< vector< Item >, Parser > , vg::PathIndex , vg::PathNode , vg::PhasedGenome , vg::ShuffledPairs , vg::VectorView< Item > , vg::ZipCodeTree
• bfs() : vg::FlowSort
• bfs_left() : vg::RepresentativeTraversalFinder
• bfs_right() : vg::RepresentativeTraversalFinder
• bga_middle : vg::MinimizerMapper::aligner_stats_t::stat_set_t
• BGZF_FOOTER_LENGTH : vg::HTSWriter
• bgzip_in : vg::io::MessageIterator
• bgzip_out : vg::io::MessageEmitter
• bidirectional_haplo_tx_gbwt : vg::IndexingParameters
• bin_for_position() : vg::Packer
• bin_size : vg::Packer
• bin_t : vg::StreamIndexBase
• bin_to_prefix() : vg::StreamIndexBase
• bin_to_ranges : vg::StreamIndexBase
• binary_extend_intervals() : haplo::haplo_DP_column
• bins_by_id_prefix : vg::StreamIndexBase
• bit_length : vg::BitString
• bits : vg::BitString
• BitString() : vg::BitString
• block_length : gafkluge::GafRecord
• BlockedGzipInputStream() : vg::io::BlockedGzipInputStream
• BlockedGzipOutputStream() : vg::io::BlockedGzipOutputStream
• Bool : vg::multipath_alignment_t
• border : vg::PhaseUnfolder
• border_offsets : vg::Exon
• border_steps : vg::Exon
• bottom : haplo::int_itvl_t
• bottom_diag : vg::BandedGlobalAligner< IntType >::BAMatrix
• bp_length() : vg::NestedTraversalFinder , vg::RepresentativeTraversalFinder
• break_chain() : vg::GraphCaller
• break_cycles() : vg::VG
• breakend_filter() : vg::Filter
• brute_force_alt_traversals() : vg::VCFTraversalFinder
• buf : vg::io::fdistream , vg::io::fdostream , vg::io::streamistream
• buffer : vg::io::BlockedGzipOutputStream , vg::io::fdinbuf , vg::io::streaminbuf , vg::ParallelKFFReader , vg::VcfBuffer , vg::zstd_ifstream , vg::zstd_ofstream
• BUFFER_SIZE : vg::GAFSorterParameters
• buffer_size : vg::GAFSorterParameters , vg::ReadFilter< Read > , vg::Recombinator::Parameters
• bufSize : vg::io::fdinbuf , vg::io::streaminbuf
• build : GBWTConfig
• build_alignments : GBWTConfig
• build_edge_indexes() : vg::VG
• build_edge_indexes_no_init_size() : vg::VG
• build_gbwt() : vg::HaplotypeIndexer
• build_gbwtgraph : GBWTConfig
• build_gbz : GBWTConfig
• build_gfa : GBWTConfig
• BUILD_HOST : vg::Version
• build_indexes() : vg::SnarlManager , vg::VG
• build_indexes_no_init_size() : vg::VG
• build_indices() : vg::PhasedGenome
• build_jobs : GBWTConfig
• build_mode : GBWTConfig
• build_node_indexes() : vg::VG
• build_node_indexes_no_init_size() : vg::VG
• build_none : GBWTConfig
• build_paths : GBWTConfig
• build_position_table() : vg::Translator
• build_site_indices_internal() : vg::PhasedGenome
• build_snarl_decomposition() : handlegraph::BuildableSnarlDecomposition
• build_subchains() : vg::HaplotypePartitioner
• BUILD_USER : vg::Version
• build_vcf : GBWTConfig
• builder : vg::RecombinatorHaplotype
• burn_in : vg::MCMCGenotyper
• by_id : vg::PathIndex
• by_start : vg::PathIndex
• byte_count : vg::io::BlockedGzipInputStream , vg::io::BlockedGzipOutputStream , vg::varint_vector_t , vg::ZipCode
• ByteCount() : vg::io::BlockedGzipInputStream , vg::io::BlockedGzipOutputStream