- o -

• object_end() : vg::ProblemDumpExplainer
• object_start() : vg::ProblemDumpExplainer
• of_node() : vg::Paths
• offset() : vg::position_t
• offsets_in_paths() : xg::XG
• on_group() : vg::io::MessageEmitter , vg::io::ProtobufEmitter< T >
• on_message() : vg::io::ProtobufEmitter< T >
• on_path_edit() : vg::FeatureSet
• one_end_anchored_filter() : vg::Filter
• open_all() : vg::StreamSorter< Message >
• open_chain() : vg::ZipCodeForest
• open_fd() : handlegraph::TriviallySerializable
• open_input() : vg::GAFSorterFile
• open_output() : vg::GAFSorterFile
• open_snarl() : vg::ZipCodeForest
• operator bool() : vg::AlignmentValidity , vg::Explainer , vg::WFAAlignment
• operator Number() : vg::Range< Number >
• operator Value &() : vg::BaseOption< Value, Parser >
• operator!=() : handlegraph::PathForEachSocket::iterator , vg::algorithms::TracedScore , vg::alignment_index_t , vg::BitString , vg::ChainIterator , vg::edit_t , vg::GaplessExtension , vg::IncrementIter , vg::io::MessageIterator , vg::io::ProtobufIterator< T > , vg::NodeSide , vg::NodeTraversal , vg::path_mapping_t , vg::path_t , vg::PhasedGenome::iterator , vg::position_t , vg::read_alignment_index_t , vg::ShuffledPairs::iterator , vg::VectorView< Item >::const_iterator , vg::ZipCodeTree::iterator , vg::ZipCodeTree::oriented_seed_t , vg::ZipCodeTree::reverse_iterator , vg::ZipCodeTree::seed_result_t
• operator&=() : vg::SmallBitset
• operator()() : std::hash< const vg::Snarl > , std::hash< handlegraph::edge_t > , std::hash< handlegraph::handle_t > , std::hash< handlegraph::net_handle_t > , std::hash< handlegraph::path_handle_t > , std::hash< handlegraph::step_handle_t > , std::hash< pair< A, B > > , std::hash< std::tuple< TT... > > , std::hash< vg::NodeSide > , std::hash< vg::NodeTraversal > , std::hash< vg::ZipCodeTree::oriented_seed_t > , std::hash< vg::ZipCodeTree::seed_result_t > , vg::BBEdgeHash , vg::discrete_distribution< T > , vg::DistanceHeuristic , vg::Genotyper::hash_ambiguous_allele_set , vg::Genotyper::hash_node_traversal , vg::Genotyper::hash_oriented_edge , vg::IncrementalSubgraph::FCmp , vg::IncrementalSubgraph::IterFCmp , vg::LazyRNG , vg::MappingHash , vg::MEMClusterer::DPScoreComparator , vg::NestedCachedPackedTraversalSupportFinder::snarl_less , vg::normal_distribution< T > , vg::ReadMasker , vg::SnarlMinDistance , vg::state_hash , vg::subcommand::Subcommand , vg::TipAnchoredMaxDistance , vg::truncated_normal_distribution< T > , vg::uniform_int_distribution< T > , vg::uniform_real_distribution< T > , vg::wang_hash< handle_t > , vg::wang_hash< handlegraph::net_handle_t > , vg::wang_hash< net_identifier_t > , vg::wang_hash< NodeSide > , vg::wang_hash< NodeTraversal > , vg::wang_hash< path_handle_t > , vg::wang_hash< std::pair< A, B > > , vg::wang_hash< T * > , vg::wang_hash< T, typename std::enable_if< std::is_integral< T >::value >::type > , vg::WideningPRNG< PRNG, OutType >
• operator*() : handlegraph::PathForEachSocket::iterator , vg::ChainIterator , vg::count_back_inserter< T > , vg::IncrementIter , vg::io::MessageIterator , vg::io::ProtobufIterator< T > , vg::PhasedGenome::iterator , vg::ShuffledPairs::iterator , vg::VectorView< Item >::const_iterator , vg::ZipCodeTree::iterator , vg::ZipCodeTree::reverse_iterator
• operator+() : vg::VectorView< Item >::const_iterator
• operator++() : handlegraph::PathForEachSocket::iterator , vg::ChainIterator , vg::count_back_inserter< T > , vg::IncrementIter , vg::io::MessageIterator , vg::io::ProtobufIterator< T > , vg::PhasedGenome::iterator , vg::ShuffledPairs::iterator , vg::VectorView< Item >::const_iterator , vg::ZipCodeTree::iterator , vg::ZipCodeTree::reverse_iterator
• operator+=() : vg::Counts , vg::MinimizerMapper::aligner_stats_t , vg::MinimizerMapper::aligner_stats_t::stat_collection_t , vg::MinimizerMapper::aligner_stats_t::stat_set_t , vg::VectorView< Item >::const_iterator
• operator-() : vg::algorithms::TracedScore , vg::VectorView< Item >::const_iterator
• operator--() : vg::VectorView< Item >::const_iterator
• operator-=() : vg::VectorView< Item >::const_iterator
• operator->() : vg::ChainIterator , vg::VectorView< Item >::const_iterator
• operator<() : job_type , vg::algorithms::TracedScore , vg::FragmentedHaplotypeVisit , vg::GAFSorterRecord , vg::GaplessExtension , vg::MatchPos , vg::MinimizerMapper::Minimizer , vg::NodeSide , vg::NodeTraversal , vg::WFAPoint
• operator=() : handlegraph::PathForEachSocket::iterator , vg::algorithms::Anchor , vg::AlignmentChainModelVertex , vg::BaseOption< Value, Parser > , vg::BitString , vg::connection_t , vg::count_back_inserter< T > , vg::edit_t , vg::GAFSorterFile , vg::HTSAlignmentEmitter , vg::HTSWriter , vg::IncrementIter , vg::IndexedVG::CacheEntry , vg::IndexRegistry , vg::io::BlockedGzipInputStream , vg::io::BlockedGzipOutputStream , vg::io::MessageEmitter , vg::io::ProtobufEmitter< T > , vg::io::StreamMultiplexer , vg::Masker , vg::MaximalExactMatch , vg::MEMChainModelVertex , vg::multipath_alignment_t , vg::ParallelKFFReader , vg::path_mapping_t , vg::path_t , vg::Paths , vg::PhasedGenome::iterator , vg::PhasedGenome , vg::position_t , vg::QualAdjXdropAligner , vg::Range< Number > , vg::SmallBitset , vg::SnarlDistanceIndexClusterer::Seed , vg::SnarlManager , vg::SnarlManager::SnarlRecord , vg::StreamIndexBase , vg::subcommand::GroupedOptionGroup , vg::subcommand::TickChainLink , vg::subpath_t , vg::VcfBuffer , vg::VectorView< Item > , vg::VG , vg::Watchdog , vg::WindowedVcfBuffer , vg::XdropAligner , vg::ZipCodeTree::iterator , vg::ZipCodeTree::reverse_iterator , vg::zstd_compress_buf , vg::zstd_decompress_buf , vg::zstd_ifstream , vg::zstd_ofstream , xg::XG , xg::XGPath
• operator==() : handlegraph::PathForEachSocket::iterator , vg::algorithms::TracedScore , vg::alignment_index_t , vg::BitString , vg::ChainIterator , vg::edit_t , vg::GaplessExtension , vg::IncrementIter , vg::io::MessageIterator , vg::io::ProtobufIterator< T > , vg::NodeSide , vg::NodeTraversal , vg::path_mapping_t , vg::path_t , vg::PhasedGenome::iterator , vg::position_t , vg::read_alignment_index_t , vg::ShuffledPairs::iterator , vg::str_view , vg::varint_vector_t , vg::VectorView< Item >::const_iterator , vg::ZipCode::decoder_t , vg::ZipCode , vg::ZipCodeTree::iterator , vg::ZipCodeTree::oriented_seed_t , vg::ZipCodeTree::reverse_iterator , vg::ZipCodeTree::seed_result_t
• operator>() : vg::algorithms::TracedScore
• operator[]() : haplo::gbwt_thread_t , vg::str_view , vg::VectorView< Item > , vg::VectorViewInverse
• operator|=() : vg::SmallBitset
• optimal_score_on_genome() : vg::PhasedGenome
• optimize() : handlegraph::MutableHandleGraph , vg::VG
• Option() : vg::Option< Value, Parser > , vg::Option< vector< Item >, Parser >
• OptionGroup() : vg::subcommand::OptionGroup< Receiver >
• order_of() : vg::IncrementalSubgraph
• OrderedGraph() : vg::DozeuInterface::OrderedGraph
• orientation_from_old_edge_type() : xg::XG
• oriented_distance() : vg::OrientedDistanceMeasurer , vg::PathOrientedDistanceMeasurer , vg::SnarlOrientedDistanceMeasurer
• oriented_motif() : vg::SpliceStats
• OrientedDistanceClusterer() : vg::OrientedDistanceClusterer
• output_filepath() : vg::IndexingPlan
• output_wabbit_map() : Vectorizer
• over_directed_edge() : vg::Paths
• over_edge() : vg::Paths
• overflow() : vg::io::fdoutbuf , vg::zstd_compress_buf
• overlap() : vg::BREAKPOINT , vg::GaplessExtension
• overlay() : vg::Translator
• overlay_node_translations() : vg::VG