Here is a list of all class members with links to the classes they belong to:

- n -

• n_bins : vg::Packer
• n_iterations : vg::MCMCGenotyper
• name : gafkluge::GafStep , vg::Alignment , vg::BenchmarkResult , vg::BREAKPOINT , vg::Funnel::Stage , vg::GAFSorterFile , vg::Locus , vg::MultipathAlignment , vg::Node , vg::Path , vg::Position , vg::Recombinator::LocalHaplotype , vg::Snarl , vg::SnarlTraversal , vg::subcommand::Subcommand , vg::Transcript , vg::VG , vg::VG::Plan , vg::Visit
• name_prefixes : vg::ReadFilter< Read >
• name_to_id : vg::algorithms::GFAIDMapInfo , vg::Paths
• nearest_offsets_in_paths() : xg::XG
• nearest_path_node() : xg::XG
• need_comma : vg::ProblemDumpExplainer
• need_line : vg::TSVExplainer
• need_tab : vg::TSVExplainer
• nested_decomposition : vg::Deconstructor
• nested_support_finder : vg::NestedFlowCaller
• NestedCachedPackedTraversalSupportFinder() : vg::NestedCachedPackedTraversalSupportFinder
• NestedFlowCaller() : vg::NestedFlowCaller
• NestedTraversalFinder() : vg::NestedTraversalFinder
• net_graph_of() : vg::SnarlManager
• net_graphs : vg::GenomeState
• net_handle : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem::SnarlTreeChild
• net_handle_to_node_problem_index : vg::SnarlDistanceIndexClusterer::ClusteringProblem
• net_node_lanes : vg::SnarlState
• NetGraph() : vg::NetGraph
• new_height() : haplo::hDP_gbwt_graph_accessor< GBWTType >
• new_length() : haplo::hDP_gbwt_graph_accessor< GBWTType >
• new_node : haplo::hDP_gbwt_graph_accessor< GBWTType >
• new_side() : haplo::hDP_gbwt_graph_accessor< GBWTType >
• next : vg::Connection , vg::connection_t
• Next() : vg::io::BlockedGzipInputStream , vg::io::BlockedGzipOutputStream
• next : vg::PathBranch , vg::PhasedGenome::HaplotypeNode , vg::Subpath , vg::subpath_t , vg::WFATree , vg::WindowedVcfBuffer
• next_char : vg::kmer_t
• next_chars : vg::KmerPosition
• next_cost : vg::AlignmentChainModelVertex , vg::MEMChainModelVertex
• next_empty_alignment() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
• next_explanation_number : vg::Explainer
• next_group : vg::IndexedVG::CacheEntry
• next_is_empty() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
• next_path_position() : xg::XG
• next_pos : vg::kmer_t
• next_pos_chars() : vg::Sampler
• next_positions : vg::KmerPosition
• next_score() : vg::WFATree
• next_size() : vg::subpath_t
• next_snarl() : vg::SnarlManager
• next_traceback_alignment() : vg::BandedGlobalAligner< IntType >::AltTracebackStack
• NGSSimulator() : vg::NGSSimulator
• no_chain_info() : vg::MinimizerMapper
• no_clustering : vg::MultipathMapper
• NO_CODE : vg::MIPayload
• NO_END_POSITION : handlegraph::PathMetadata
• NO_HAPLOTYPE : handlegraph::PathMetadata
• NO_LOCUS_NAME : handlegraph::PathMetadata
• no_Ns : vg::Sampler
• NO_PHASE_BLOCK : handlegraph::PathMetadata
• no_pos() : vg::WFATree
• NO_SAMPLE_NAME : handlegraph::PathMetadata
• no_splice_log_odds : vg::MultipathMapper
• no_splice_natural_log_odds : vg::MultipathMapper
• NO_SUBRANGE : handlegraph::PathMetadata
• NO_VALUE : vg::MIPayload
• node : vg::BandedGlobalAligner< IntType >::BAMatrix , vg::CactusSide , vg::Graph , vg::MatchPos , vg::NodeSide , vg::NodeTraversal
• Node : vg::Tree< T >
• NODE : vg::ZipCode
• node() : xg::XGPath
• node_at_vector_offset() : handlegraph::VectorizableHandleGraph , xg::XG
• node_by_id : vg::VG
• node_cache : vg::Sampler
• NODE_CHAIN_COMPONENT_OFFSET : vg::ZipCode
• node_count : vg::DagifiedGraph , vg::VG
• NODE_COUNT : vg::ZipCodeTree
• node_count : xg::XG
• node_count_next() : vg::VG
• node_count_prev() : vg::VG
• node_graph_idx() : xg::XG
• node_handle : vg::MIPayload
• node_id : vg::KmerMatch , vg::LocationSupport , vg::mapping_t , vg::NodePileup , vg::Position , vg::position_t , vg::Visit
• node_id_to_idx : vg::BandedGlobalAligner< IntType >
• node_ids : vg::ContractingGraph , vg::SparseUnionFind
• node_index : vg::DozeuInterface::graph_pos_s , vg::Packer , vg::VG
• node_is_in_cyclic_snarl() : vg::ZipCodeTree
• node_is_invalid() : vg::ZipCodeTree
• NODE_IS_REVERSED_OFFSET : vg::ZipCode
• node_length : vg::MIPayload , vg::PathIndex , vg::Sampler , vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem , vg::SourceSinkOverlay
• NODE_LENGTH_OFFSET : vg::ZipCode
• node_lengths : haplo::gbwt_thread_t
• node_listeners : vg::algorithms::GFAParser
• node_locations : vg::PhasedGenome
• node_mapping : vg::Paths
• node_mappings : vg::BandedGlobalAligner< IntType >::BABuilder
• NODE_MISSING : vg::AlignmentValidity
• node_occurrences : vg::PathIndex
• node_offset : vg::MatchPos , vg::Viz , vg::WFAAlignment , vg::WFAPoint
• NODE_OFFSET_OFFSET : vg::ZipCode
• node_path_traversal_counts() : vg::Paths
• node_path_traversals() : vg::Paths
• node_pileups : vg::Pileup
• node_qual_bin_size : vg::Packer
• node_quality_bin_offset() : vg::Packer
• node_quality_bin_size() : vg::Packer
• node_quality_civ : vg::Packer
• node_quality_dynamic : vg::Packer
• node_quality_locks : vg::Packer
• node_quality_vector_size() : vg::Packer
• node_rank() : vg::VG
• node_sequence : vg::WFANode
• NODE_SIZE : vg::ZipCode
• node_start_at_path_position() : xg::XG
• node_starts_in_path() : vg::VG
• node_subset : vg::SubgraphOverlay
• node_supports : vg::SupportAugmentedGraph
• node_to_position : vg::Filter
• node_to_segment_and_offsets : vg::FlatFileBackTranslation
• node_to_snarl() : vg::SnarlGraph
• node_to_variant : vg::VCFTraversalFinder
• NODE_TOO_SHORT : vg::AlignmentValidity
• node_traversal : vg::PhasedGenome::HaplotypeNode
• node_vector_offset() : handlegraph::VectorizableHandleGraph , xg::XG
• node_weight_callback : vg::FlowTraversalFinder
• nodelength() : haplo::gbwt_thread_t
• nodes : haplo::gbwt_thread_t , vg::algorithms::Graph , vg::DiagramExplainer , vg::FlowSort::Growth , vg::MaximalExactMatch , vg::MEMClusterer::DPScoreComparator , vg::MEMClusterer::HitGraph , vg::WFATree
• nodes_before_offset() : vg::Viz
• nodes_next() : vg::VG
• nodes_prev() : vg::VG
• NodeSide() : vg::NodeSide
• NodeTraversal() : vg::NodeTraversal
• nodeType : haplo::linear_haplo_structure
• non_intermediate_aliases() : vg::AliasGraph
• nonce : vg::Sampler
• nondisjoint() : haplo::int_itvl_t
• None : vg::IndexingParameters
• nonoverlapping_node_context_without_paths() : vg::VG
• normal : vg::Haplotypes::Subchain
• normal_aligners : vg::Genotyper
• normal_distribution() : vg::normal_distribution< T >
• normal_supports : vg::BREAKPOINT
• nowhere() : vg::algorithms::TracedScore
• np_bv : xg::XG
• np_bv_select : xg::XG
• np_iv : xg::XG
• nr_iv : xg::XG
• nt_table : vg::DinucleotideMachine , vg::GSSWAligner
• nth_copy_of_handle() : vg::DagifiedGraph
• Null : vg::multipath_alignment_t
• NullClusterer() : vg::NullClusterer
• NullMaskingGraph() : vg::NullMaskingGraph
• num_alt_alns : vg::MultipathMapper
• num_bases : vg::BasePileup
• num_bases_dynamic : vg::Packer
• num_bp_per_min : vg::MinimizerMapper
• NUM_CANDIDATES : vg::Recombinator
• num_edges_dynamic : vg::Packer
• num_forward_reads : vg::EdgePileup
• num_haplotypes() : vg::PhasedGenome
• NUM_HAPLOTYPES : vg::Recombinator
• num_haplotypes : vg::Recombinator::Parameters
• NUM_INLINE : vg::MatchPos::PathList
• num_items : vg::ShuffledPairs
• num_jobs : vg::RebuildParameters
• num_left_handles : vg::JoinedSpliceGraph
• num_mapping_attempts : vg::MultipathMapper
• num_nodes_dynamic : vg::Packer
• num_null_nodes : vg::DozeuPinningOverlay , vg::NullMaskingGraph
• num_pairs : vg::ShuffledPairs
• num_paths : GBWTConfig
• num_paths_set : GBWTConfig
• num_reads : vg::EdgePileup
• num_snarls() : vg::SnarlManager
• num_threads : vg::Transcriptome
• number_of_values : vg::SummaryStatistics
• numeric_mode : vg::algorithms::GFAIDMapInfo
• nx_iv : xg::XG