Here is a list of all class members with links to the classes they belong to:

- m -

• m_a : vg::uniform_int_distribution< T > , vg::uniform_real_distribution< T >
• m_alpha : vg::truncated_normal_distribution< T >
• m_b : vg::uniform_int_distribution< T > , vg::uniform_real_distribution< T >
• m_beta : vg::truncated_normal_distribution< T >
• m_distU1 : vg::normal_distribution< T > , vg::truncated_normal_distribution< T >
• m_mean : vg::normal_distribution< T >
• m_mu : vg::truncated_normal_distribution< T >
• m_sigma : vg::truncated_normal_distribution< T >
• m_stddev : vg::normal_distribution< T >
• m_sums : vg::discrete_distribution< T >
• m_weights : vg::discrete_distribution< T >
• MAGIC_BYTES : vg::StreamIndexBase
• MAGIC_NUMBER : vg::Haplotypes::Header
• magic_number : vg::Haplotypes::Header , vg::ZipCodeCollection
• main_function : vg::subcommand::Subcommand
• make_bands() : vg::Mapper
• make_circular() : vg::Paths
• make_compact() : vg::Packer
• make_dynamic() : vg::Packer
• make_edge() : vg::PhaseUnfolder
• make_empty() : vg::WFAAlignment
• make_graph() : vg::MSAConverter
• make_hit_graph() : vg::ComponentMinDistanceClusterer , vg::GreedyMinDistanceClusterer , vg::MEMClusterer , vg::MinDistanceClusterer , vg::NullClusterer , vg::OrientedDistanceClusterer , vg::TVSClusterer
• make_indexes() : vg::IndexRegistry
• make_linear() : vg::Paths
• make_long_options() : vg::subcommand::BaseOptionGroup , vg::subcommand::GroupedOptionGroup , vg::subcommand::OptionGroup< Receiver >
• make_nontrivial_multipath_alignment() : vg::MultipathMapper
• make_null_alignment() : vg::Surjector
• make_null_mp_alignment() : vg::Surjector
• make_plan() : vg::IndexRegistry
• make_primer() : vg::PrimerFinder
• make_short_options() : vg::subcommand::BaseOptionGroup , vg::subcommand::GroupedOptionGroup , vg::subcommand::OptionGroup< Receiver >
• make_snarl_graph() : vg::MCMCGenotyper
• make_snarl_map() : vg::MCMCGenotyper
• make_subset_graph() : vg::Genotyper
• make_unlocalized_insertion() : vg::WFAAlignment
• manage() : vg::SnarlManager
• manager : vg::GenomeState
• MANDATORY_FIELDS : vg::GAFSorterRecord
• MANY_LIMIT : vg::MinimizerMapper
• map() : vg::MinimizerMapper
• map_entry_type : vg::WFAPoint
• map_from_chains() : vg::MinimizerMapper
• map_from_extensions() : vg::MinimizerMapper
• map_order_to_original : vg::WindowedVcfBuffer
• map_paired() : vg::MinimizerMapper
• map_stage_results_to_previous_stage() : vg::Funnel
• map_to_nodes() : vg::PrimerFinder
• mapped_nodes_ids : vg::Primer
• Mapper() : vg::Mapper
• mapper_alignment_cutoff : vg::VariantAdder
• mapping : vg::Path , vg::path_t , vg::PhaseUnfolder
• mapping_edits : vg::BandedGlobalAligner< IntType >::BABuilder
• mapping_enters_side() : vg::Genotyper
• mapping_exits_side() : vg::Genotyper
• mapping_is_total_match() : vg::VG
• mapping_itr : vg::Paths
• mapping_likelihoods() : vg::MultipathMapper
• mapping_path_id() : vg::Paths
• mapping_path_name() : vg::Paths
• mapping_positions : vg::PathIndex
• mapping_quality : vg::Alignment , vg::multipath_alignment_t , vg::MultipathAlignment
• mapping_quality_method : vg::BaseMapper
• mapping_quality_score_diff() : vg::GSSWAligner
• mapping_size() : vg::path_t
• mapping_t() : vg::mapping_t
• mapping_type : vg::RebuildJob
• mappings : vg::RebuildJob
• mappings_by_rank : vg::Paths
• mapq : gafkluge::GafRecord
• mapq_scaling_factor : vg::MultipathMapper
• mapq_score_scale : vg::MinimizerMapper
• mapq_score_window : vg::MinimizerMapper
• margin_after : vg::algorithms::Anchor
• margin_before : vg::algorithms::Anchor
• mark_dfs() : vg::FlowSort
• mark_smallVariant_alignments() : vg::Filter
• mark_sv_alignments() : vg::Filter
• MarkovDistribution() : vg::NGSSimulator::MarkovDistribution< From, To >
• mask : vg::GaplessExtender , vg::ReadMasker , vg::WFAExtender
• mask_sequences() : vg::Masker
• Masker() : vg::Masker
• match : ScoringOptions , vg::BandedGlobalAligner< IntType >::BAMatrix
• Match : vg::BandedGlobalAligner< IntType >
• match : vg::GSSWAligner , vg::SSWAligner , vg::WFAAlignment
• match_count : vg::MaximalExactMatch
• match_fanouts_t : vg::MEMClusterer , vg::MultipathMapper
• match_forward() : vg::WFANode
• match_predecessor() : vg::WFATree
• matches : gafkluge::GafRecord , vg::DinucleotideMachine , vg::SeqComplexity< MaxOrder >
• MATCHES : vg::WFANode
• matches_annotation() : vg::ReadFilter< Read >
• matches_name() : vg::ReadFilter< Read >
• matching : vg::BandedGlobalAligner< IntType >::BABuilder
• MatchPos() : vg::MatchPos
• mate_mapped_to_disjoint_subgraph : vg::Alignment
• mate_on_reverse_strand : vg::Alignment
• mate_rescues : vg::Mapper
• mate_unmapped : vg::Alignment
• mates : vg::BREAKPOINT
• matrix_state : vg::BandedGlobalAligner< IntType >::BABuilder
• matrix_t : vg::BandedGlobalAligner< IntType >
• max : vg::WFAExtender::ErrorModel::Event , vg::WideningPRNG< PRNG, OutType >
• max_alignment_gap : vg::MultipathMapper
• max_alignments : vg::MinimizerMapper
• max_alt_mappings : vg::MultipathMapper
• max_anchors : vg::Surjector
• max_attempts : vg::Mapper
• max_band_cells : vg::Surjector
• max_band_jump : vg::Mapper
• max_branch_trim_length : vg::MultipathMapper
• max_bubble_paths : vg::LegacyCaller , vg::RepresentativeTraversalFinder
• max_buf_size : vg::StreamSorter< Message >
• max_chain_connection : vg::MinimizerMapper
• max_chaining_problems : vg::MinimizerMapper
• max_chains_per_tree : vg::MinimizerMapper
• max_cluster_mapping_quality : vg::Mapper
• max_context_radius : vg::VariantAdder
• max_dagify_duplications : vg::MultipathMapper
• max_degree : PruningParameters
• max_deletion_scan_nodes : vg::VCFTraversalFinder
• max_depth : vg::RepresentativeTraversalFinder , vg::ZipCode
• max_diagonal : vg::WFATree::ScoreProperties
• max_direct_to_chain : vg::MinimizerMapper
• MAX_DISPLAYED_SUGGESTIONS_PER_CATEGORY : vg::DiagramExplainer
• max_distance : vg::IncrementalSubgraph , vg::WFATree
• max_distance_from_start() : vg::IncrementalSubgraph
• max_dozeu_cells : vg::MinimizerMapper
• max_dp_cells : vg::MinimizerMapper
• max_expected_dist_approx_error : vg::MultipathMapper , vg::OrientedDistanceClusterer
• max_exponential_rate_intercept : vg::MultipathMapper
• max_exponential_rate_slope : vg::MultipathMapper
• max_exponential_shape_intercept : vg::MultipathMapper
• max_exponential_shape_slope : vg::MultipathMapper
• max_extension_mismatches : vg::MinimizerMapper
• max_extensions : vg::MinimizerMapper
• max_fan_in : vg::StreamSorter< Message >
• max_fanout_base_quality : vg::MultipathMapper
• max_fans_out : vg::MultipathMapper
• max_flow_sort() : vg::FlowSort
• max_fragment_length : vg::MinimizerMapper
• max_fragments : vg::MinimizerMapper
• max_gap : vg::MEMClusterer
• max_graph_lookback_bases : vg::MinimizerMapper
• max_graph_lookback_bases_per_base : vg::MinimizerMapper
• max_group_size : vg::io::MessageEmitter
• max_handle : vg::DozeuPinningOverlay
• max_handle_memo_size : vg::MemoizingGraph
• max_het_bias : vg::Genotyper , vg::RatioSupportSnarlCaller
• max_id : handlegraph::algorithms::SubHandleGraph , vg::algorithms::GFAIDMapInfo , vg::ConstructedChunk , vg::Constructor , vg::DagifiedGraph , vg::SubHandleGraph , xg::XG
• max_in() : vg::algorithms::TracedScore
• max_indel_bases : vg::MinimizerMapper
• max_indel_bases_per_base : vg::MinimizerMapper
• max_indel_het_bias : vg::RatioSupportSnarlCaller
• MAX_INPUT_VERSION : vg::StreamIndexBase
• max_intron_length : vg::MultipathMapper
• max_iterations : vg::SmallSnarlSimplifier
• max_kmers_per_block : vg::ParallelKFFReader
• max_length : vg::Counts , vg::ReadFilter< Read >
• max_link_length() : vg::JoinedSpliceGraph
• max_local_extensions : vg::MinimizerMapper
• max_low_complexity_anchor_prune : vg::Surjector
• max_low_complexity_anchor_trim : vg::Surjector
• max_ma_bias : vg::RatioSupportSnarlCaller
• max_mapping_p_value : vg::MultipathMapper
• max_mapping_quality : vg::BaseMapper
• max_memory_proportion : vg::IndexingParameters
• MAX_MESSAGE_SIZE : vg::io::MessageEmitter , vg::io::MessageIterator
• max_middle_dp_length : vg::MinimizerMapper
• max_middle_gap : vg::MinimizerMapper
• max_min_chain_score : vg::MinimizerMapper
• MAX_MISMATCHES : vg::GaplessExtender
• max_missing_variant_warnings : vg::HaplotypeIndexer
• max_motif_pairs : vg::MultipathMapper
• max_multi_alns : vg::BandedGlobalAligner< IntType >::AltTracebackStack , vg::BandedGlobalAligner< IntType >
• max_multimaps : vg::Mapper , vg::MinimizerMapper
• max_node : vg::SubgraphOverlay
• max_node_id() : handlegraph::algorithms::SubHandleGraph , handlegraph::HandleGraph , vg::DagifiedGraph , vg::DozeuPinningOverlay , vg::ExtraNodeGraph , vg::IdentityOverlay , vg::IncrementalSubgraph , vg::IndexedVG , vg::JoinedSpliceGraph , vg::MemoizingGraph , vg::NetGraph , vg::NullMaskingGraph , vg::PathSubgraph , vg::ReverseGraph , vg::SnarlGraph , vg::SourceSinkOverlay , vg::StrandSplitGraph , vg::SubgraphOverlay , vg::SubHandleGraph , vg::SubpathOverlay , vg::TreeSubgraph , vg::VG , vg::VGset , xg::XG
• max_node_rank() : xg::XG
• max_node_size : vg::Constructor , vg::IndexingParameters , vg::VariantAdder
• max_num_nodes : vg::IncrementalSubgraph
• max_overhang : vg::Counts , vg::ReadFilter< Read >
• max_p_value_memo_size : vg::MultipathMapper
• max_parsed_variant_size : vg::Constructor
• max_path_id : vg::Paths
• max_path_length : vg::Filter
• max_path_rank() : xg::XG
• max_path_search_steps : vg::Genotyper , vg::PathRestrictedTraversalFinder , vg::ReadRestrictedTraversalFinder
• max_possible_mapping_quality() : vg::GSSWAligner , vg::Mapper
• max_product_size : vg::PrimerPair
• max_prune_iterations : vg::VCFTraversalFinder
• max_read_lookback_bases : vg::MinimizerMapper
• max_read_lookback_bases_per_base : vg::MinimizerMapper
• max_reads : vg::Counts , vg::ReadFilter< Read >
• max_reads_used : vg::ReadFilter< Read >
• max_ref_het_bias : vg::RatioSupportSnarlCaller
• max_rescue_attempts : vg::MinimizerMapper , vg::MultipathMapper
• max_rescue_p_value : vg::MultipathMapper
• max_rgfa_rank : vg::algorithms::GFAParser
• max_sample_size() : vg::FragmentLengthDistribution
• max_search_depth : vg::LegacyCaller
• max_search_width : vg::LegacyCaller
• max_separation : vg::GreedyMinDistanceClusterer
• max_shift() : vg::MultipathAlignmentGraph
• max_single_end_mappings_for_rescue : vg::MultipathMapper
• max_skipped_bases : vg::MinimizerMapper
• max_slide : vg::Surjector
• max_snarl_cut_size : vg::MultipathMapper
• max_snarl_edges : vg::FlowCaller
• max_snarl_shallow_size : vg::NestedFlowCaller
• max_softclip_iterations : vg::Mapper
• max_softclip_overlap : vg::MultipathMapper
• max_splice_overhang : vg::MultipathMapper
• max_splice_ref_search_length : vg::MultipathMapper
• max_steps_of_handle_memo_size : vg::MemoizingGraph
• max_sub_mem_recursion_depth : vg::BaseMapper
• max_subgraph_bases_per_read_base : vg::Surjector
• max_suboptimal_path_score_ratio : vg::MultipathMapper
• MAX_TAG_LENGTH : vg::io::Registry
• max_tail_anchor_prune : vg::Surjector
• max_tail_dp_length : vg::MinimizerMapper
• max_tail_gap : vg::MinimizerMapper
• max_tail_length : vg::MinimizerMapper , vg::Surjector
• max_tail_merge_supress_length : vg::MultipathMapper
• max_target_factor : vg::Mapper
• max_to_fragment : vg::MinimizerMapper
• max_trav_size : vg::PoissonSupportSnarlCaller::PoissonCallInfo
• max_traversal_cutoff : vg::VCFTraversalFinder
• max_traversal_length : vg::FlowTraversalFinder
• max_tries : vg::AbstractReadSampler
• max_uncalled_alleles : vg::VCFOutputCaller
• max_unique_min : vg::MinimizerMapper
• max_value : vg::SummaryStatistics
• MAX_VALUE : vg::varint_vector_t
• max_vcf_line_length : vg::VCFOutputCaller
• max_vertex() : vg::AlignmentChainModel , vg::MEMChainModel
• max_walk : vg::PathOrientedDistanceMeasurer
• max_width : vg::RepresentativeTraversalFinder
• max_xdrop_gap_length : vg::Mapper
• MaximalExactMatch() : vg::MaximalExactMatch
• maximum_mapping_quality_approx() : vg::GSSWAligner
• maximum_mapping_quality_exact() : vg::GSSWAligner
• maximum_quality : vg::Packer
• maximum_sample_size : vg::FragmentLengthDistribution
• maybe_mq_threshold : vg::Mapper
• MCMCCaller() : vg::MCMCCaller
• MCMCGenotyper() : vg::MCMCGenotyper
• mean() : vg::FragmentLengthDistribution , vg::normal_distribution< T > , vg::SummaryStatistics , vg::truncated_normal_distribution< T >
• mean_node_length() : vg::Transcriptome
• measurements_begin() : vg::FragmentLengthDistribution
• measurements_end() : vg::FragmentLengthDistribution
• median : vg::SummaryStatistics
• median_mem_coverage() : vg::MEMClusterer::HitGraph
• mem : vg::MEMChainModelVertex , vg::MEMClusterer::HitNode
• mem_coverage_min_ratio : vg::MultipathMapper
• mem_reseed_length : vg::BaseMapper
• MEMAccelerator() : vg::MEMAccelerator
• MEMChainModel() : vg::MEMChainModel
• MEMChainModelVertex() : vg::MEMChainModelVertex
• memcluster_t : vg::MultipathMapper
• MEMClusterer() : vg::MEMClusterer
• memo : haplo::hDP_gbwt_graph_accessor< GBWTType >
• memoized_LF() : vg::MEMAccelerator
• MemoizingGraph() : vg::MemoizingGraph
• memory_high_water_kb : vg::Watchdog
• mems_id_clusters_to_alignments() : vg::Mapper
• merge : GBWTConfig , vg::Funnel , vg::IntegratedSnarlFinder::MergedAdjacencyGraph , vg::VG
• merge_fast : GBWTConfig
• merge_from_dynamic() : vg::Packer
• merge_from_files() : vg::Packer
• merge_group() : vg::Funnel
• merge_groups() : vg::Funnel
• merge_id_space() : vg::VGset
• merge_insert : GBWTConfig
• merge_mode : GBWTConfig
• merge_nodes() : vg::VG
• merge_none : GBWTConfig
• merge_parallel : GBWTConfig
• merge_parameters : GBWTConfig
• merge_partially_redundant_match_nodes() : vg::MultipathAlignmentGraph
• merge_rescued_mappings() : vg::MultipathMapper
• merge_state() : vg::DinucleotideMachine
• merge_union() : vg::VG
• merged_group : vg::IndexedVG::CacheEntry
• MergedAdjacencyGraph() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
• message : vg::AlignmentValidity , vg::NoAlignmentInBandException
• message_buffer : vg::algorithms::GFAFormatError
• message_emitter : vg::io::ProtobufEmitter< T >
• message_handlers : vg::io::ProtobufEmitter< T >
• message_it : vg::io::ProtobufIterator< T >
• message_listener_t : vg::io::ProtobufEmitter< T >
• MessageEmitter() : vg::io::MessageEmitter
• MessageIterator() : vg::io::MessageIterator
• metadata : GBWTConfig , vg::RecombinatorHaplotype
• metadata_mode : GBWTConfig
• min : vg::WFAExtender::ErrorModel::Event , vg::WideningPRNG< PRNG, OutType >
• min_ad_log_likelihood_for_filter : vg::RatioSupportSnarlCaller
• min_alt_path_support : vg::SupportBasedSnarlCaller
• min_approx_path_distance() : xg::XG
• min_avg_qual : vg::Filter
• min_banded_mq : vg::Mapper
• min_base_qual : vg::Counts
• min_base_quality : vg::ReadFilter< Read >
• min_base_quality_fraction : vg::ReadFilter< Read >
• min_bp_edge_override : vg::TraversalSupportFinder
• min_chain_score_per_base : vg::MinimizerMapper
• min_chaining_problems : vg::MinimizerMapper
• min_chains : vg::MinimizerMapper
• min_cluster_length : vg::Mapper
• min_clustering_mem_length : vg::MultipathMapper
• min_count_to_keep : vg::RareVariantSimplifier
• min_cov : vg::Filter
• min_cut() : vg::FlowSort
• min_depth : vg::Filter
• min_diagonal : vg::WFATree::ScoreProperties
• min_distance : vg::WFATree
• min_distance_from_start() : vg::IncrementalSubgraph
• min_dists() : vg::DeletionAligner
• min_edge_support : vg::RepresentativeTraversalFinder , vg::SupportRestrictedTraversalFinder
• min_end_matches : vg::Counts , vg::ReadFilter< Read >
• min_extension_sets : vg::MinimizerMapper
• min_extensions : vg::MinimizerMapper
• min_fold_coverage_for_downsample : vg::Surjector
• min_frequency_to_keep : vg::RareVariantSimplifier
• min_handle : vg::DagifiedGraph , xg::XGPath
• min_id : handlegraph::algorithms::SubHandleGraph , vg::SubHandleGraph , xg::XG
• min_identity : vg::Mapper
• min_link_length() : vg::JoinedSpliceGraph
• min_mad_for_filter : vg::SupportBasedSnarlCaller
• min_mapq : vg::Counts , vg::ReadFilter< Read >
• min_median_mem_coverage_for_split : vg::MultipathMapper
• min_mem_length : vg::BaseMapper
• min_multimaps : vg::Mapper
• min_node : vg::SubgraphOverlay
• min_node_id() : handlegraph::algorithms::SubHandleGraph , handlegraph::HandleGraph , vg::DagifiedGraph , vg::DozeuPinningOverlay , vg::ExtraNodeGraph , vg::IdentityOverlay , vg::IncrementalSubgraph , vg::IndexedVG , vg::JoinedSpliceGraph , vg::MemoizingGraph , vg::NetGraph , vg::NullMaskingGraph , vg::PathSubgraph , vg::ReverseGraph , vg::SnarlGraph , vg::SourceSinkOverlay , vg::StrandSplitGraph , vg::SubgraphOverlay , vg::SubHandleGraph , vg::SubpathOverlay , vg::TreeSubgraph , vg::VG , xg::XG
• min_node_support : vg::RepresentativeTraversalFinder , vg::SupportRestrictedTraversalFinder
• min_node_support_cache : vg::CachedPackedTraversalSupportFinder
• min_pair_fragment_length() : vg::Mapper
• min_percent_identity : vg::Filter
• min_primary : vg::ReadFilter< Read >
• min_product_size : vg::PrimerPair
• min_qual : vg::Filter
• MIN_QUEUE_ITEM_BYTES : vg::io::StreamMultiplexer
• min_read_separation : vg::ComponentMinDistanceClusterer
• min_recurrence : vg::Genotyper , vg::PathRestrictedTraversalFinder , vg::ReadRestrictedTraversalFinder
• min_score : vg::Counts
• min_score_factor : vg::VariantAdder
• min_score_per_base : vg::Genotyper
• min_sec_score : vg::Counts
• min_secondary : vg::ReadFilter< Read >
• min_separation : vg::GreedyMinDistanceClusterer
• min_shift_for_prune : vg::Surjector
• min_site_depth : vg::SupportBasedSnarlCaller
• min_size : vg::SmallSnarlSimplifier
• min_softclip_length_for_splice : vg::MultipathMapper
• min_softclipped_score_for_splice : vg::MultipathMapper
• min_splice_length : vg::MultipathAlignmentEmitter , vg::SplicedHTSAlignmentEmitter , vg::Surjector
• min_splice_repair_length : vg::Surjector
• min_splice_rescue_matches : vg::MultipathMapper
• min_support_in_path() : vg::NestedTraversalFinder , vg::RepresentativeTraversalFinder
• min_tail_anchor_length : vg::MultipathMapper
• min_to_fragment : vg::MinimizerMapper
• min_total_support_for_call : vg::SupportBasedSnarlCaller
• min_unique_node_fraction : vg::MinimizerMapper
• min_unique_per_strand : vg::Genotyper
• MIN_VERSION : vg::Haplotypes::Header
• MinDistanceClusterer() : vg::MinDistanceClusterer
• minimizer_coverage_flank : vg::MinimizerMapper
• minimizer_downsampling_max_window_length : vg::MinimizerMapper
• minimizer_downsampling_window_count : vg::MinimizerMapper
• minimizer_downweight_threshold : vg::IndexingParameters
• minimizer_index : vg::HaplotypePartitioner , vg::MinimizerMapper
• minimizer_index_type : vg::HaplotypePartitioner
• minimizer_s : vg::IndexingParameters
• minimizer_score_fraction : vg::MinimizerMapper
• MinimizerMapper() : vg::MinimizerMapper
• minimum_distance_between() : vg::ZipCode
• mismatch : ScoringOptions , vg::GSSWAligner , vg::SSWAligner , vg::WFAAlignment , vg::WFATree
• mismatch_positions : vg::GaplessExtension
• mismatches() : vg::GaplessExtension , vg::WFAExtender::ErrorModel
• MISSING_KEY : vg::GAFSorterRecord
• MissingEOF() : vg::io::BlockedGzipInputStream
• mixture_weights : vg::SpliceStats
• mode : HaplotypesConfig , vg::SummaryStatistics
• mode_invalid : HaplotypesConfig
• mode_log_likelihood : vg::SpliceStats
• mode_preprocess : HaplotypesConfig
• mode_sample_graph : HaplotypesConfig
• mode_sample_haplotypes : HaplotypesConfig
• mode_statistics : HaplotypesConfig
• model : vg::AlignmentChainModel , vg::MEMChainModel
• motif_data : vg::SpliceStats
• motif_frequency() : vg::SpliceStats
• motif_is_reverse() : vg::SpliceStats
• motif_matches : vg::SpliceRegion
• motif_score() : vg::SpliceStats
• motif_size() : vg::SpliceStats
• move() : vg::SmallBitset
• mp_aln_emitter : vg::ReadFilter< Read >
• mp_aln_emitters : vg::MultipathAlignmentEmitter
• mq_overlap : vg::Mapper
• MSAConverter() : vg::MSAConverter
• msg : vg::InsufficientInputException , vg::RewindPlanException , vg::SizeLimitExceededException
• mtx : vg::ParallelKFFReader
• mu : vg::FragmentLengthDistribution
• multi_position_annotations : vg::AbstractReadSampler
• multi_surject() : vg::Surjector
• multiallelic_sv_warned : vg::Constructor
• multipath_align() : vg::MultipathMapper
• multipath_alignment_t() : vg::multipath_alignment_t
• multipath_map() : vg::MultipathMapper
• multipath_map_paired() : vg::MultipathMapper
• MultipathAlignmentEmitter() : vg::MultipathAlignmentEmitter
• MultipathAlignmentGraph() : vg::MultipathAlignmentGraph
• MultipathMapper() : vg::MultipathMapper
• MultipathProblem() : vg::MultipathProblem
• multiplexer : vg::HTSWriter , vg::io::GafAlignmentEmitter , vg::io::TSVAlignmentEmitter , vg::io::VGAlignmentEmitter
• mut_graph_impl : vg::IndexingParameters
• mut_sampler : vg::NGSSimulator
• mutable_connection() : vg::subpath_t
• mutable_edit() : vg::path_mapping_t
• mutable_mapping() : vg::path_t
• mutable_next() : vg::subpath_t
• mutable_path() : vg::subpath_t
• mutable_position() : vg::path_mapping_t
• mutable_quality() : vg::multipath_alignment_t
• mutable_sequence() : vg::edit_t , vg::multipath_alignment_t
• mutable_start() : vg::multipath_alignment_t
• mutable_subpath() : vg::multipath_alignment_t
• MutableGraphImplementation : vg::IndexingParameters
• mutate() : vg::Sampler
• mutate_edit() : vg::Sampler
• mutation_alphabets : vg::NGSSimulator
• mutex_graph : vg::Transcriptome
• mutex_transcript_paths : vg::Transcriptome
• my_mapper : vg::Filter
• my_max_distance : vg::Filter
• my_names : Vectorizer
• my_path_position_graph : vg::Filter
• my_vectors : Vectorizer
• my_vg : vg::Filter
• my_xg : Vectorizer