Here is a list of all class members with links to the classes they belong to:

- e -

• earlier_stage_items : vg::Funnel::Item
• early_stop_number : vg::ComponentMinDistanceClusterer
• easy_sort() : vg::StreamSorter< Message >
• eat_trivial_children : vg::RepresentativeTraversalFinder
• edge : vg::EdgePileup , vg::Graph
• EDGE : vg::ZipCodeTree
• edge_allele_labels() : vg::Genotyper
• edge_by_sides : vg::VG
• edge_cache : vg::Sampler
• edge_count() : vg::VG , xg::XG
• edge_cov_bin_size : vg::Packer
• edge_coverage() : vg::Packer
• edge_coverage_bin_offset() : vg::Packer
• edge_coverage_bin_size() : vg::Packer
• edge_coverage_civ : vg::Packer
• edge_coverage_dynamic : vg::Packer
• edge_handle() : handlegraph::HandleGraph
• edge_index() : handlegraph::VectorizableHandleGraph , vg::Packer , vg::VG , xg::XG
• edge_listeners : vg::algorithms::GFAParser
• edge_locks : vg::Packer
• edge_max : PruningParameters , vg::VariantAdder
• edge_orientation() : xg::XG
• edge_pileups : vg::Pileup
• edge_ref_t : vg::DiagramExplainer
• edge_relative_offset() : xg::XG
• edge_support_cache : vg::CachedPackedTraversalSupportFinder
• edge_supports : vg::SupportAugmentedGraph
• edge_to_snarl_edge() : vg::SnarlGraph
• edge_vector_size() : vg::Packer
• edge_weight : vg::FlowSort::WeightedGraph
• edge_weight_callback : vg::FlowTraversalFinder
• edges : vg::algorithms::Node , vg::DiagramExplainer , vg::PathNode
• edges_end() : vg::VG
• edges_from : vg::MEMClusterer::HitNode , vg::VG
• edges_in_nodes : vg::FlowSort::WeightedGraph
• edges_of() : vg::VG
• edges_of_node() : vg::VG
• edges_of_nodes() : vg::VG
• edges_on_end : vg::VG
• edges_on_start : vg::VG
• edges_out_nodes : vg::FlowSort::WeightedGraph
• edges_start() : vg::VG
• edges_to : vg::MEMClusterer::HitNode , vg::VG
• edit : vg::Mapping , vg::path_mapping_t , vg::VG
• Edit : vg::WFAAlignment
• edit_count : vg::Packer
• edit_csas : vg::Packer
• edit_fast() : vg::VG
• edit_length : vg::BandedGlobalAligner< IntType >::BABuilder , vg::Packer
• edit_read_end_idx : vg::BandedGlobalAligner< IntType >::BABuilder
• edit_size() : vg::path_mapping_t
• edit_t() : vg::edit_t
• edit_tmpfile_names : vg::Packer
• edit_value() : vg::Packer
• EditedTranscriptPath() : vg::EditedTranscriptPath
• edits : vg::WFAAlignment
• edits_at_position() : vg::Packer
• effective_position : vg::Funnel::Item
• effective_position_t : vg::Funnel
• effective_position_union() : vg::Funnel
• embed_ref_path_snarls() : vg::SnarlGraph
• embed_snarl() : vg::SnarlGraph
• embed_snarls() : vg::SnarlGraph
• embed_transcript_paths() : vg::Transcriptome
• embedded_alignments : vg::AugmentedGraph
• embedded_path_names : vg::TranscriptPath
• emit() : Vectorizer , vg::io::TSVAlignmentEmitter , vg::ReadFilter< Read >
• emit_extra_message() : vg::BackTranslatingAlignmentEmitter , vg::io::AlignmentEmitter , vg::io::VGAlignmentEmitter , vg::SurjectingAlignmentEmitter
• emit_gaf_traversals() : vg::GAFOutputCaller
• emit_gaf_variant() : vg::GAFOutputCaller
• emit_group() : vg::io::MessageEmitter , vg::io::ProtobufEmitter< T >
• emit_mapped_pair() : vg::io::AlignmentEmitter
• emit_mapped_pairs() : vg::BackTranslatingAlignmentEmitter , vg::HTSAlignmentEmitter , vg::io::AlignmentEmitter , vg::io::GafAlignmentEmitter , vg::io::NullAlignmentEmitter , vg::io::TSVAlignmentEmitter , vg::io::VGAlignmentEmitter , vg::SurjectingAlignmentEmitter
• emit_mapped_single() : vg::io::AlignmentEmitter
• emit_mapped_singles() : vg::BackTranslatingAlignmentEmitter , vg::HTSAlignmentEmitter , vg::io::AlignmentEmitter , vg::io::GafAlignmentEmitter , vg::io::NullAlignmentEmitter , vg::io::TSVAlignmentEmitter , vg::io::VGAlignmentEmitter , vg::SurjectingAlignmentEmitter
• emit_pair() : vg::io::AlignmentEmitter
• emit_pairs() : vg::BackTranslatingAlignmentEmitter , vg::HTSAlignmentEmitter , vg::io::AlignmentEmitter , vg::io::GafAlignmentEmitter , vg::io::NullAlignmentEmitter , vg::io::TSVAlignmentEmitter , vg::io::VGAlignmentEmitter , vg::MultipathAlignmentEmitter , vg::SurjectingAlignmentEmitter
• emit_single() : vg::io::AlignmentEmitter
• emit_singles() : vg::BackTranslatingAlignmentEmitter , vg::HTSAlignmentEmitter , vg::io::AlignmentEmitter , vg::io::GafAlignmentEmitter , vg::io::NullAlignmentEmitter , vg::io::TSVAlignmentEmitter , vg::io::VGAlignmentEmitter , vg::MultipathAlignmentEmitter , vg::SurjectingAlignmentEmitter
• emit_snarl_recursive() : vg::NestedFlowCaller
• emit_tsv() : vg::ReadFilter< Read >
• emit_variant() : vg::MCMCCaller , vg::VCFOutputCaller
• emitter : vg::GAFOutputCaller
• emitter_t : vg::StreamSorter< Message >
• emplace_back() : vg::ZipCodeCollection
• empty() : haplo::int_itvl_t , vg::algorithms::GFAParser , vg::BitString , vg::GaplessExtension , vg::MatchPos , vg::MatchPos::PathList , vg::MultipathAlignmentGraph , vg::Option< vector< Item >, Parser > , vg::Paths , vg::str_view , vg::VectorView< Item > , vg::VG , vg::WFAAlignment
• EMPTY : vg::ZipCode
• empty() : vg::ZipCodeCollection
• empty_diagonal_range() : vg::WFATree
• empty_edge_ends : vg::VG
• empty_full_paths : vg::BandedGlobalAligner< IntType >::AltTracebackStack
• empty_ids : vg::VG
• empty_score : vg::BandedGlobalAligner< IntType >::AltTracebackStack
• enabled : vg::Explainer
• encode() : vg::MEMAccelerator
• encode_edge() : xg::XG
• encoding : vg::ParallelKFFReader
• end : gafkluge::GafStep , handlegraph::PathForEachSocket
• END : handlegraph::SnarlDecomposition
• end : ReferenceInterval , vg::algorithms::kmer_t , vg::algorithms::walk_t , vg::GFFRecord , vg::HaplotypePartitioner::Subchain , vg::Haplotypes::Subchain , vg::kmer_t , vg::MaximalExactMatch , vg::NetGraph , vg::Option< vector< Item >, Parser > , vg::PathIndex , vg::PathNode , vg::PhasedGenome , vg::Range< Number > , vg::Region , vg::ShuffledPairs , vg::Snarl , vg::VectorView< Item > , vg::ZipCodeTree , vg::ZipCodeTree::iterator
• end_degree() : vg::VG
• end_file : vg::io::BlockedGzipOutputStream
• end_handle() : vg::Haplotypes::Subchain
• end_hint() : vg::algorithms::Anchor
• end_hint_offset() : vg::algorithms::Anchor
• end_offset : vg::algorithms::Anchor
• end_pos : vg::algorithms::Anchor
• end_seed : vg::algorithms::Anchor
• end_self_reachable : vg::Snarl
• end_zip : vg::algorithms::Anchor
• EndFile() : vg::io::BlockedGzipOutputStream
• endpoint_t : handlegraph::SnarlDecomposition
• endpoints : vg::GraphSynchronizer::Lock
• ends_at() : handlegraph::SnarlDecomposition
• ends_at_end() : handlegraph::SnarlDecomposition
• ends_at_start() : handlegraph::SnarlDecomposition
• ends_at_tip() : handlegraph::SnarlDecomposition
• ensure_edge() : vg::DiagramExplainer
• ensure_edit_tmpfiles_open() : vg::Packer
• ensure_header() : vg::HTSWriter
• ensure_node() : vg::DiagramExplainer
• ensure_parent_directory() : vg::temp_file::Handler
• entries : haplo::haplo_DP_column , vg::subcommand::Preset
• erase() : vg::SnarlState
• erase_in_out_edges() : vg::FlowSort
• error_model : vg::WFAExtender
• error_on_missing_path : vg::Transcriptome
• escape_delim() : vg::Packer
• escape_delims() : vg::Packer
• establish_strand_consistency() : vg::MultipathMapper
• estimate_batch_size() : vg::Packer
• estimate_bin_count() : vg::Packer
• estimate_data_width() : vg::Packer
• estimate_distribution() : vg::FragmentLengthDistribution
• estimate_edge_score() : vg::MEMClusterer
• estimate_gc_content() : vg::BaseMapper
• estimate_max_possible_mapping_quality() : vg::GSSWAligner , vg::Mapper
• estimate_missed_rescue_multiplicity() : vg::MultipathMapper
• estimate_next_best_score() : vg::GSSWAligner
• evaluate() : vg::WFAExtender::ErrorModel::Event
• exact() : vg::GaplessExtension
• exact_name : vg::ReadFilter< Read >
• exclude_dist_tree_merges() : vg::OrientedDistanceClusterer
• exclude_merges() : vg::OrientedDistanceMeasurer , vg::PathOrientedDistanceMeasurer , vg::SnarlOrientedDistanceMeasurer
• exclude_overlapping_min : vg::MinimizerMapper
• exclude_unaligned : vg::BaseMapper
• excluded_feature : vg::Counts
• excluded_features : vg::ReadFilter< Read >
• excluded_refpos_contigs : vg::ReadFilter< Read >
• excluded_samples : vg::HaplotypeIndexer
• exec : vg::IndexRecipe
• execute() : vg::AppendHaplotypeCommand , vg::DeleteHaplotypeCommand , vg::GenomeState , vg::GenomeStateCommand , vg::IndexRecipe , vg::InsertHaplotypeCommand , vg::JobSchedule , vg::ReplaceLocalHaplotypeCommand , vg::ReplaceSnarlHaplotypeCommand , vg::SwapHaplotypesCommand
• execute_recipe() : vg::IndexRegistry
• Exhaustive : vg::Genotyper
• ExhaustiveTraversalFinder() : vg::ExhaustiveTraversalFinder
• exons : vg::Transcript
• exp_rho : haplo::haploMath::RRMemo
• expand() : vg::Funnel
• expand_context() : vg::VG
• expand_context_by_length() : vg::VG
• expand_context_by_steps() : vg::VG
• expand_for_softclips() : vg::MultipathMapper
• expand_if_necessary() : vg::WFATree
• expand_path() : vg::VG
• expanded() : vg::WFANode
• expanded_subgraph() : vg::RegionExpander
• expected_depth : vg::PoissonSupportSnarlCaller::PoissonCallInfo
• expected_separation : vg::GreedyMinDistanceClusterer
• Explainer() : vg::Explainer
• explaining() : vg::Explainer
• explanation_number : vg::Explainer
• extend() : haplo::haplo_DP_column , haplo::haplo_DP_rectangle , vg::DozeuInterface , vg::GaplessExtender , vg::IncrementalSubgraph , vg::Paths , vg::QualAdjXdropAligner , vg::RecombinatorHaplotype , vg::VG , vg::WFATree , vg::XdropAligner
• extend_dist_tree_by_buckets() : vg::OrientedDistanceClusterer
• extend_dist_tree_by_permutations() : vg::OrientedDistanceClusterer
• extend_over() : vg::WFATree
• extend_path() : vg::PhaseUnfolder
• extend_seed_group() : vg::MinimizerMapper
• extend_state() : vg::PhaseUnfolder
• extender : vg::MinimizerMapper
• extension_score_threshold : vg::MinimizerMapper
• extension_set_min_score : vg::MinimizerMapper
• extension_set_score_threshold : vg::MinimizerMapper
• extension_to_alignment() : vg::MinimizerMapper
• external_handle() : xg::XGPath
• external_id_map : vg::algorithms::GFAParser
• extra_data : vg::FeatureSet::Feature
• extra_fragments : vg::Recombinator::Parameters , vg::Recombinator::Statistics
• extra_multimaps : vg::Mapper
• extra_snarls : vg::HaplotypePartitioner::Subchain
• extract() : vg::algorithms::GFAParser
• extract_cluster_graph() : vg::MultipathMapper
• extract_component() : vg::PathChunker
• extract_id_range() : vg::PathChunker
• extract_left : vg::IncrementalSubgraph
• extract_maximal_graph() : vg::MultipathMapper
• extract_overlapping_paths() : vg::Surjector
• extract_path_component() : vg::PathChunker
• extract_rescue_graph() : vg::MultipathMapper
• extract_restrained_graph() : vg::MultipathMapper
• extract_snarls() : vg::PathChunker
• extract_subgraph() : vg::PathChunker
• extracted : vg::IncrementalSubgraph
• extracting_left() : vg::IncrementalSubgraph
• ExtraNodeGraph() : vg::ExtraNodeGraph