Here is a list of all class members with links to the classes they belong to:

- l -

• lane : vg::ReplaceSnarlHaplotypeCommand
• large_alignment_band_padding : vg::VariantAdder
• larger_prime : vg::ShuffledPairs
• last : vg::Counts , vg::FeatureSet::Feature
• last_checkin : vg::Watchdog::thread_state_t
• last_component : vg::ZipCode::chain_code_t
• last_correct_stage() : vg::Funnel
• last_group_min_id : vg::StreamIndexBase
• last_node_length : vg::PathIndex
• last_progress : vg::Progressive
• last_tagged_stage() : vg::Funnel
• latest() : vg::Funnel
• layout_order : vg::DagifiedGraph
• layout_order_of_handle() : vg::DagifiedGraph
• LazyRNG() : vg::LazyRNG
• lcp : vg::BaseMapper
• lcp_ind : vg::Filter
• left : vg::Primer , vg::Support
• left_border : vg::Viz
• left_degree() : vg::VG
• left_ends : vg::ConstructedChunk
• left_full : vg::GaplessExtension
• left_handle_trans : vg::JoinedSpliceGraph
• left_maximal : vg::GaplessExtension
• left_primer : vg::PrimerPair
• left_seed_node() : vg::JoinedSpliceGraph
• left_splice_node() : vg::JoinedSpliceGraph
• left_splice_offset : vg::JoinedSpliceGraph
• left_subgraph : vg::JoinedSpliceGraph
• left_telomere_node : vg::PhasedGenome::Haplotype
• LegacyCaller() : vg::LegacyCaller
• len : vg::SeqComplexity< MaxOrder >
• length : haplo::haplo_DP_column , haplo::hDP_gbwt_graph_accessor< GBWTType > , MappingRun , ReferenceInterval , vg::algorithms::Anchor , vg::algorithms::GFAParser , vg::algorithms::walk_t , vg::BitString , vg::GaplessExtension , vg::HaplotypePartitioner::Subchain , vg::mapping_t , vg::MaximalExactMatch , vg::MEMAccelerator , vg::MinimizerMapper::Minimizer , vg::Path , vg::Primer , vg::VG , vg::WFAAlignment , vg::WFANode , vg::ZipCode::chain_code_t , vg::ZipCode::node_code_t , vg::ZipCode::snarl_code_t
• lengths : vg::FragmentLengthDistribution
• less_than() : vg::StreamSorter< Message >
• likelihood : vg::Genotype
• likelihood_ln : vg::Genotyper::Affinity
• likelihoods() : vg::VG
• likely_mate_positions() : vg::Mapper
• likely_mismapping() : vg::MultipathMapper
• likely_misrescue() : vg::MultipathMapper
• limit() : MappingRun
• line() : vg::TSVExplainer
• line_number : vg::algorithms::GFAFormatError
• linear_haplo_structure() : haplo::linear_haplo_structure
• linear_product_size : vg::PrimerPair
• linear_structure : vg::HaplotypePartitioner::Parameters
• LinearScoreProvider() : haplo::LinearScoreProvider
• list_names : GBWTConfig
• literal_target_memory_usage() : vg::IndexingPlan
• load() : vg::Packer , vg::Packers , vg::Paths , vg::StreamIndexBase , vg::Translator , xg::XGPath
• load_alignments() : vg::MSAConverter
• load_bed() : vg::FeatureSet
• load_from() : vg::Haplotypes
• load_from_file() : vg::Packer
• load_from_old_version() : xg::XGPath
• load_gbwtgraph() : GraphHandler
• load_gbz() : GraphHandler
• load_one() : vg::io::VPKG
• load_pack_as_supports() : vg::SupportAugmentedGraph
• load_primers() : vg::PrimerFinder
• load_supports() : vg::SupportAugmentedGraph
• load_translations() : vg::AugmentedGraph
• load_v1() : vg::Haplotypes::Subchain , vg::Haplotypes::TopLevelChain
• load_v2() : vg::Haplotypes::TopLevelChain
• local_handle() : xg::XGPath
• Lock() : vg::GraphSynchronizer::Lock
• lock() : vg::GraphSynchronizer::Lock
• locked_nodes : vg::GraphSynchronizer::Lock , vg::GraphSynchronizer
• locus : vg::Alignment
• LOCUS_MATCH_ANY : handlegraph::PathMetadata
• LOCUS_MATCH_NUMERICAL_WITHOUT_HAPLOTYPE : handlegraph::PathMetadata
• locus_to_variant() : vg::Genotyper
• log_alignment() : vg::MinimizerMapper
• log_base : vg::GSSWAligner , vg::SpliceStats
• log_bits() : vg::MinimizerMapper
• log_continue_factor() : haplo::haploMath::RRMemo
• log_continue_probability : haplo::haploMath::RRMemo
• log_likelihood : vg::Genotype
• log_likelihood_approx_factor : vg::MultipathMapper
• log_name() : vg::MinimizerMapper
• log_population_size() : haplo::haploMath::RRMemo
• log_posterior : vg::Genotype
• log_prior : vg::Genotype
• log_reads : GiraffeMainOptions
• log_recombination_penalty() : haplo::haploMath::RRMemo
• log_target() : vg::MCMCGenotyper
• logRRDiff() : haplo::haploMath::RRMemo
• logS() : haplo::haploMath::RRMemo
• logS_bases : haplo::haploMath::RRMemo
• logT() : haplo::haploMath::RRMemo
• logT_base : haplo::haploMath::RRMemo
• LONG_LIMIT : vg::MinimizerMapper
• long_opt : vg::BaseOption< Value, Parser >
• long_options : vg::ConfigurableParser
• long_options_used : vg::ConfigurableParser
• long_read_minimizer_k : vg::IndexingParameters
• long_read_minimizer_w : vg::IndexingParameters
• long_read_minimizer_W : vg::IndexingParameters
• long_ref_contig : vg::Deconstructor
• longest_detectable_gap() : vg::GSSWAligner
• longest_detectable_gap_in_range() : vg::MinimizerMapper
• longest_match_len() : vg::PrimerFinder
• longest_paths_in_forest() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
• look_back() : vg::ZipCodeTree
• lookup_for_read_in() : vg::read_alignment_index_t
• lookup_in() : vg::alignment_index_t
• loop_left : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
• loop_right : vg::SnarlDistanceIndexClusterer::SnarlTreeNodeProblem
• low_complexity_p_value : vg::Surjector
• lower_bound : vg::BREAKPOINT
• lower_bound_heuristic : vg::TargetValueSearch
• lowercase_warned_alt : vg::Constructor
• lowercase_warned_sequences : vg::Constructor
• lru_cache_size : vg::Packer
• lv0_alt_len : vg::Deconstructor::NestingInfo
• lv0_ref_len : vg::Deconstructor::NestingInfo
• lv0_ref_name : vg::Deconstructor::NestingInfo
• lv0_ref_start : vg::Deconstructor::NestingInfo