vg
tools for working with variation graphs
- ~ -
~AbstractReadSampler() :
vg::AbstractReadSampler
~AliasGraph() :
vg::AliasGraph
~Aligner() :
vg::Aligner
~AlignmentChainModelVertex() :
vg::AlignmentChainModelVertex
~AlignmentEmitter() :
vg::io::AlignmentEmitter
~AltTracebackStack() :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
~AppendHaplotypeCommand() :
vg::AppendHaplotypeCommand
~ArgSpec() :
vg::subcommand::ArgSpec< T, Receiver >
~BABuilder() :
vg::BandedGlobalAligner< IntType >::BABuilder
~BAMatrix() :
vg::BandedGlobalAligner< IntType >::BAMatrix
~BandedGlobalAligner() :
vg::BandedGlobalAligner< IntType >
~BaseArgSpec() :
vg::subcommand::BaseArgSpec< Receiver >
~BaseOption() :
vg::BaseOption< Value, Parser >
~BaseOptionGroup() :
vg::subcommand::BaseOptionGroup
~BaseValuation() :
vg::subcommand::BaseValuation
~BlockedGzipInputStream() :
vg::io::BlockedGzipInputStream
~BlockedGzipOutputStream() :
vg::io::BlockedGzipOutputStream
~BuildableSnarlDecomposition() :
handlegraph::BuildableSnarlDecomposition
~CachedPackedTraversalSupportFinder() :
vg::CachedPackedTraversalSupportFinder
~CallInfo() :
vg::SnarlCaller::CallInfo
~Colors() :
vg::Colors
~CompletedTranscriptPath() :
vg::CompletedTranscriptPath
~ComponentMinDistanceClusterer() :
vg::ComponentMinDistanceClusterer
~connection_t() :
vg::connection_t
~ConsistencyCalculator() :
vg::ConsistencyCalculator
~DagifiedGraph() :
vg::DagifiedGraph
~Deconstructor() :
vg::Deconstructor
~Deflection() :
vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
~DeletableHandleGraph() :
handlegraph::DeletableHandleGraph
~DeleteHaplotypeCommand() :
vg::DeleteHaplotypeCommand
~DeletionAligner() :
vg::DeletionAligner
~DiagramExplainer() :
vg::DiagramExplainer
~DinucleotideMachine() :
vg::DinucleotideMachine
~DistanceHeuristic() :
vg::DistanceHeuristic
~DozeuInterface() :
vg::DozeuInterface
~DozeuPinningOverlay() :
vg::DozeuPinningOverlay
~DPScoreComparator() :
vg::MEMClusterer::DPScoreComparator
~edit_t() :
vg::edit_t
~EditedTranscriptPath() :
vg::EditedTranscriptPath
~ExhaustiveTraversalFinder() :
vg::ExhaustiveTraversalFinder
~ExpandingOverlayGraph() :
handlegraph::ExpandingOverlayGraph
~Explainer() :
vg::Explainer
~Filter() :
vg::Filter
~FixedGenotypePriorCalculator() :
vg::FixedGenotypePriorCalculator
~FlagArgSpec() :
vg::subcommand::FlagArgSpec< Receiver >
~FlatFileBackTranslation() :
vg::FlatFileBackTranslation
~FlowCaller() :
vg::FlowCaller
~FragmentLengthDistribution() :
vg::FragmentLengthDistribution
~GafAlignmentEmitter() :
vg::io::GafAlignmentEmitter
~GAFOutputCaller() :
vg::GAFOutputCaller
~GAFSorterFile() :
vg::GAFSorterFile
~GBWTTraversalFinder() :
vg::GBWTTraversalFinder
~GenomeStateCommand() :
vg::GenomeStateCommand
~GenotypeLikelihoodCalculator() :
vg::GenotypeLikelihoodCalculator
~GenotypePriorCalculator() :
vg::GenotypePriorCalculator
~GFAHandleGraph() :
vg::GFAHandleGraph
~GFFReader() :
vg::GFFReader
~GFFRecord() :
vg::GFFRecord
~GraphCaller() :
vg::GraphCaller
~GreedyMinDistanceClusterer() :
vg::GreedyMinDistanceClusterer
~GroupedOptionGroup() :
vg::subcommand::GroupedOptionGroup
~GSSWAligner() :
vg::GSSWAligner
~HandleGraph() :
handlegraph::HandleGraph
~HandleGraphSnarlFinder() :
vg::HandleGraphSnarlFinder
~Handler() :
vg::temp_file::Handler
,
xg::temp_file::Handler
~haplo_DP_column() :
haplo::haplo_DP_column
~Haplotype() :
vg::PhasedGenome::Haplotype
~HaplotypeNode() :
vg::PhasedGenome::HaplotypeNode
~HitEdge() :
vg::MEMClusterer::HitEdge
~HitNode() :
vg::MEMClusterer::HitNode
~HTSAlignmentEmitter() :
vg::HTSAlignmentEmitter
~HTSWriter() :
vg::HTSWriter
~IdentityOverlay() :
vg::IdentityOverlay
~IncrementalSubgraph() :
vg::IncrementalSubgraph
~IndexingPlan() :
vg::IndexingPlan
~IndexRegistry() :
vg::IndexRegistry
~InsertHaplotypeCommand() :
vg::InsertHaplotypeCommand
~iterator() :
handlegraph::PathForEachSocket::iterator
,
vg::PhasedGenome::iterator
~j2pb_error() :
j2pb_error
~JobSchedule() :
vg::JobSchedule
~JoinedSpliceGraph() :
vg::JoinedSpliceGraph
~json_autoptr() :
json_autoptr
~JSONStreamHelper() :
vg::io::JSONStreamHelper< T >
~LegacyCaller() :
vg::LegacyCaller
~linear_haplo_structure() :
haplo::linear_haplo_structure
~Mapper() :
vg::Mapper
~Masker() :
vg::Masker
~MCMCCaller() :
vg::MCMCCaller
~MEMChainModelVertex() :
vg::MEMChainModelVertex
~MEMClusterer() :
vg::MEMClusterer
~MemoizingGraph() :
vg::MemoizingGraph
~MessageEmitter() :
vg::io::MessageEmitter
~MinDistanceClusterer() :
vg::MinDistanceClusterer
~MSAConverter() :
vg::MSAConverter
~multipath_alignment_t() :
vg::multipath_alignment_t
~MultipathAlignmentEmitter() :
vg::MultipathAlignmentEmitter
~MultipathAlignmentGraph() :
vg::MultipathAlignmentGraph
~MultipathMapper() :
vg::MultipathMapper
~MutableHandleGraph() :
handlegraph::MutableHandleGraph
~MutablePathDeletableHandleGraph() :
handlegraph::MutablePathDeletableHandleGraph
~MutablePathHandleGraph() :
handlegraph::MutablePathHandleGraph
~MutablePathMetadata() :
handlegraph::MutablePathMetadata
~MutablePathMutableHandleGraph() :
handlegraph::MutablePathMutableHandleGraph
~NamedNodeBackTranslation() :
handlegraph::NamedNodeBackTranslation
~NestedCachedPackedTraversalSupportFinder() :
vg::NestedCachedPackedTraversalSupportFinder
~NestedFlowCaller() :
vg::NestedFlowCaller
~NestedTraversalFinder() :
vg::NestedTraversalFinder
~NullClusterer() :
vg::NullClusterer
~NullMaskingGraph() :
vg::NullMaskingGraph
~Option() :
vg::Option< Value, Parser >
,
vg::Option< vector< Item >, Parser >
~OptionGroup() :
vg::subcommand::OptionGroup< Receiver >
~OptionInterface() :
vg::OptionInterface
~OrientedDistanceMeasurer() :
vg::OrientedDistanceMeasurer
~PackedTraversalSupportFinder() :
vg::PackedTraversalSupportFinder
~Packer() :
vg::Packer
~path_mapping_t() :
vg::path_mapping_t
~path_t() :
vg::path_t
~PathBasedTraversalFinder() :
vg::PathBasedTraversalFinder
~PathChunker() :
vg::PathChunker
~PathForEachSocket() :
handlegraph::PathForEachSocket
~PathHandleGraph() :
handlegraph::PathHandleGraph
~PathMetadata() :
handlegraph::PathMetadata
~PathOrientedDistanceMeasurer() :
vg::PathOrientedDistanceMeasurer
~PathPositionHandleGraph() :
handlegraph::PathPositionHandleGraph
~PathRestrictedTraversalFinder() :
vg::PathRestrictedTraversalFinder
~PathSubgraphOverlay() :
vg::PathSubgraphOverlay
~PhasedGenome() :
vg::PhasedGenome
~Pictographs() :
vg::Pictographs
~PoissonCallInfo() :
vg::PoissonSupportSnarlCaller::PoissonCallInfo
~PoissonSupportSnarlCaller() :
vg::PoissonSupportSnarlCaller
~position_t() :
vg::position_t
~PrimerFinder() :
vg::PrimerFinder
~ProblemDumpExplainer() :
vg::ProblemDumpExplainer
~ProtobufEmitter() :
vg::io::ProtobufEmitter< T >
~QualAdjAligner() :
vg::QualAdjAligner
~QualAdjXdropAligner() :
vg::QualAdjXdropAligner
~RangeArgSpec() :
vg::subcommand::RangeArgSpec< T, Receiver >
~RatioSupportSnarlCaller() :
vg::RatioSupportSnarlCaller
~ReadRestrictedTraversalFinder() :
vg::ReadRestrictedTraversalFinder
~RegionExpander() :
vg::RegionExpander
~ReplaceLocalHaplotypeCommand() :
vg::ReplaceLocalHaplotypeCommand
~ReplaceSnarlHaplotypeCommand() :
vg::ReplaceSnarlHaplotypeCommand
~RepresentativeTraversalFinder() :
vg::RepresentativeTraversalFinder
~ReverseGraph() :
vg::ReverseGraph
~RewindPlanException() :
vg::RewindPlanException
~ScoreProvider() :
haplo::ScoreProvider
~Serializable() :
handlegraph::Serializable
~SimpleConsistencyCalculator() :
vg::SimpleConsistencyCalculator
~SimpleTraversalSupportCalculator() :
vg::SimpleTraversalSupportCalculator
~SizeLimitExceededException() :
vg::SizeLimitExceededException
~SmallBitset() :
vg::SmallBitset
~SnarlCaller() :
vg::SnarlCaller
~SnarlDecomposition() :
handlegraph::SnarlDecomposition
~SnarlFinder() :
vg::SnarlFinder
~SnarlManager() :
vg::SnarlManager
~SnarlMinDistance() :
vg::SnarlMinDistance
~SnarlOrientedDistanceMeasurer() :
vg::SnarlOrientedDistanceMeasurer
~SparseUnionFind() :
vg::SparseUnionFind
~SplicedHTSAlignmentEmitter() :
vg::SplicedHTSAlignmentEmitter
~SpliceRegion() :
vg::SpliceRegion
~SSWAligner() :
vg::SSWAligner
~StrandSplitGraph() :
vg::StrandSplitGraph
~StreamMultiplexer() :
vg::io::StreamMultiplexer
~SubgraphOverlay() :
vg::SubgraphOverlay
~subpath_t() :
vg::subpath_t
~SubpathOverlay() :
vg::SubpathOverlay
~SupportBasedSnarlCaller() :
vg::SupportBasedSnarlCaller
~SupportRestrictedTraversalFinder() :
vg::SupportRestrictedTraversalFinder
~SwapHaplotypesCommand() :
vg::SwapHaplotypesCommand
~TargetValueSearch() :
vg::TargetValueSearch
~TickChainLink() :
vg::subcommand::TickChainLink
~TipAnchoredMaxDistance() :
vg::TipAnchoredMaxDistance
~TranscriptPath() :
vg::TranscriptPath
~TraversalFinder() :
vg::TraversalFinder
~TraversalSupportCalculator() :
vg::TraversalSupportCalculator
~TraversalSupportFinder() :
vg::TraversalSupportFinder
~Tree() :
vg::Tree< T >
~TreeNode() :
vg::TreeNode< T >
~TriviallySerializable() :
handlegraph::TriviallySerializable
~TrivialTraversalFinder() :
vg::TrivialTraversalFinder
~TSVAlignmentEmitter() :
vg::io::TSVAlignmentEmitter
~TSVExplainer() :
vg::TSVExplainer
~TVSClusterer() :
vg::TVSClusterer
~Valuation() :
vg::subcommand::Valuation< T >
~ValueArgSpec() :
vg::subcommand::ValueArgSpec< T, Receiver, Holder >
~VCFGenotyper() :
vg::VCFGenotyper
~VCFOutputCaller() :
vg::VCFOutputCaller
~VcfRecordConverter() :
vg::VcfRecordConverter
~VcfRecordFilter() :
vg::VcfRecordFilter
~VCFTraversalFinder() :
vg::VCFTraversalFinder
~VectorizableHandleGraph() :
handlegraph::VectorizableHandleGraph
~Vectorizer() :
Vectorizer
~VectorView() :
vg::VectorView< Item >
~VG() :
vg::VG
~VGAlignmentEmitter() :
vg::io::VGAlignmentEmitter
~Viz() :
vg::Viz
~Watchdog() :
vg::Watchdog
~XdropAligner() :
vg::XdropAligner
~XG() :
xg::XG
~XGPath() :
xg::XGPath
~zstd_compress_buf() :
vg::zstd_compress_buf
~zstd_decompress_buf() :
vg::zstd_decompress_buf
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